Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2149 161 1e-33 seq1319 152 7e-31 seq1944 123 4e-22 seq4979 104 3e-16 seq407 91.5 2e-12 >seq2149 Length=43014 Score = 161 bits (178), Expect = 1e-33 Identities = 322/482 (67%), Gaps = 12/482 (2%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 ||||| |||||||||||||| |||| ||| |||||| || || ||||| || ||| || Sbjct 33699 GGCGGAGGCAAGCGCAAGGGTTCCTTCGCCATCTACCTAGAGCCCTGGCATGCAGACATC 33758 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | |||||||| |||||||||||||| ||| ||| | | || || Sbjct 33759 TTTGAATTCCTGGACCTGCGTAAGAACCACGGCAA-CGAGTTGGA-----GCGTGCACGT 33812 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 ||||| || |||| ||| |||||| ||||||||| ||||| ||| ||| || || | | Sbjct 33813 GATCTGTTCTACGCCCTCTGGACGCCCGACCTGTTCATGCGGCGCGTGGAGAGCGACGGG 33872 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCT---GCACGAATGCTATGGCGCG 262024 |||||||| || |||||||| |||| || ||||| | ||| ||| |||| | Sbjct 33873 GACTGGTCCCTTTTTTGCCCCAACGAGTGCCCGGGCCTGGCGGACGTGTGC---GGCGAG 33929 Query 262025 GCCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCC 262084 | ||| || ||||| | | || | || | Sbjct 33930 GAGTTTAACCAGCTCTACGCCAGCTACGAGAAGAGTGGGAAAGCACGCAAGGTTATTAAG 33989 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 || | ||| |||||| || ||| | | |||| | ||||| |||||||| |||||| Sbjct 33990 GCCCAGCAGCTCTGGTTCGCGATTCTGGACTCCCAGGTGGAGACAGGCACGCCTTACATG 34049 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG 262204 | | |||||||||| |||||||| |||||||||||| ||||||||| | | Sbjct 34050 CTGTTCAAGGACGCCTGCAACCTGAAATCAAACCAGCAGAACTTGGGCACCATCAAATCA 34109 Query 262205 GCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAAC 262264 |||| |||||||| |||||| || ||| |||||||| |||| || |||||| Sbjct 34110 TCCAATCTGTGCACGGAGATCATCGAGTACACGTCGCCCGATGAGGTCGCGGTCTGCAAC 34169 Query 262265 CT 262266 || Sbjct 34170 CT 34171 Score = 145 bits (160), Expect = 1e-28 Identities = 216/304 (71%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | |||||||| | | ||||| || ||||| || || || |||||| Sbjct 33399 ACCTACAATCTCATGTCGCTCAAACTTTTCACGCATGCTACGCCTACACTTTTCAATGCC 33458 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| ||||| || || || || ||||| || || |||||||| || || ||| Sbjct 33459 GGCACACCGCGGCCCCAACTCTCCTCCTGCTTCCTCCTGACCATGAAGGAGGACTCCATC 33518 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| ||||| |||||||| ||||| ||| ||||| || || || || Sbjct 33519 GACGGCATCTACGACACCCTCAAGCAATGCGCTGCCATTTCCAAATTTGCGGGTGGGATT 33578 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCG-GGCGCCTACGTGGCGGGCACCAACGGCCA 260121 || | || ||||| | || | |||| | | ||||| | || | |||||| Sbjct 33579 GGCGTATCCATCCACAACATTCG-GGCGCGAGACTCCTACATTCGTGGATCGAACGGCAC 33637 Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||||| | || || ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 33638 CTCCAACGGCATCGTACCTATGCTCCGCGTTTTCAACGATACGGCCCGCTACGTCGACCA 33697 Query 260182 GTGC 260185 | || Sbjct 33698 GGGC 33701 >seq1319 Length=24917 Score = 152 bits (168), Expect = 7e-31 Identities = 216/301 (72%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGC 259941 ||||||||| |||| ||| || || ||||| | || | || || || || | || Sbjct 9792 ACCTACGAGCTCATGA-GCAACAAGTGGTTCATCCACGCCTCCCCTACTCTTTTCCACGC 9734 Query 259942 CGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGAT 260001 ||||||| |||||||| || |||||||| || ||| |||| | || || ||||| Sbjct 9733 GGGCACGCGTTTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCATGCAAGCGGACTCGAT 9674 Query 260002 CGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCAT 260061 || || ||||| |||||||| ||||||||||| | || ||||||||| || || || Sbjct 9673 CGTTGGTATCTACGACACGCTGAAGCAGTGCGCCGTGATAAGCAAGGCGGCGGGGGGAAT 9614 Query 260062 CGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCA 260121 ||| | | | ||||| | ||||| ||||||||| | |||||| || || Sbjct 9613 CGGCCTCTCGGTCCACAACATCCGCGCGCACGGCGCCTACATTAAGGGCACGAAGGGGAC 9554 Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 | |||||| || ||||||||||| | || || ||| ||||||||||||||| ||||| Sbjct 9553 GAGCAACGGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCA 9494 Query 260182 G 260182 | Sbjct 9493 G 9493 Score = 109 bits (120), Expect = 8e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 262118 CATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAAC 262177 || || ||||| ||||||||||||||| | ||||||||||| |||||||| |||||| Sbjct 9168 CAGATTGAGACGGGCACGCCCTACATGCTGTACAAGGACGCTTGCAACCTGAAGAGCAAC 9109 Query 262178 CAGCAGAACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAGATCGTCCA 262230 || |||||| ||||||||| | |||| |||||||||||||||||||| Sbjct 9108 CAACAGAACTTGGGCACCATCAAGTCATCCAATCTGTGCACCGAGATCGTCCA 9056 Score = 89.7 bits (98), Expect = 7e-12 Identities = 118/160 (74%), Gaps = 8/160 (5%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCG-CAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCT 261846 || || |||||| | | |||| ||||||||| ||||||||| ||||||||||| ||| | Sbjct 9492 GGGGGAGGCAAGAGGCCAGGG-GCCTTTGCCATCTACCTGGAGCCGTGGCACGCGGACAT 9434 Query 261847 CATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCG 261906 | | | ||||||||| ||||||||||| || ||||| || || | || || Sbjct 9433 CTTTGAAGTGCTGGACCTGCGGAAGAACCACGG-AAAGGAGGAGG-----CGCGGGCCCG 9380 Query 261907 CGATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATG 261946 |||||||| || || || |||| ||||||||| ||| Sbjct 9379 GGATCTCTTCTATGGACTATGGATTCCCGACCTGTTCATG 9340 >seq1944 Length=8059 Score = 123 bits (136), Expect = 4e-22 Identities = 171/238 (72%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 724905 TCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAAC 724964 |||| |||||||||||||||||||||||||| ||| || | | ||| ||||| Sbjct 3001 TCCTACATCTACAAGGTGCTCAAGCAGGTGCATCCCGACACTGGT-----ATC-TCCAAG 3054 Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 | || ||| ||||||| || || ||||| |||||||| ||| ||| ||| Sbjct 3055 CGTGGTGTTTCCATCCTGAACTCCTTCATCGGTGACATTTTCGACCGCCTCGCCACGGAG 3114 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || ||||| || | || |||| ||| || | | |||||||||||||| Sbjct 3115 GCTGGCAAGCTGGCTCGTTACACCAAGAAGTCCACCCTCTCCTCCCGCGAGATCCAGACG 3174 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||||||| ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 3175 GCTGTCCGCCTGACGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3232 >seq4979 Length=17524 Score = 104 bits (114), Expect = 3e-16 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||||| |||||| || ||| ||||||||||||| ||||| ||||| ||| |||||| Sbjct 10604 GATCTGGGATATGTACAAACAAG-CCGAGGCCTCCTTCTGGACGGCCGAAGAGCTCGACC 10546 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 ||| | ||||| | |||||| | | | ||| |||| || || || || | Sbjct 10545 TCGCCCACGACAAGACGGACTGGGAAAAGTTAACGGACAACGAACGTCACTTTGTCTCAC 10486 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 ||||||||||| || ||||||||| || ||||| ||| |||||| ||||| Sbjct 10485 ACGTCCTCGCC-TTCTTCGCCGCCTCGGACGGCATTGTGAACGAGAATTTGGCC 10433 >seq407 Length=52422 Score = 91.5 bits (100), Expect = 2e-12 Identities = 127/173 (73%), Gaps = 9/173 (5%) Strand=Plus/Minus Query 1817561 CCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAGT 1817619 |||| || ||||| || || | |||||||| || | |||||||||||||||||| |||| Sbjct 30395 CCTCCGCCCGCGCCTCCTCCGTCTGGGGCAGGTGCATGTTCATCTCGTCGCCGTCGAAGT 30336 Query 1817620 CGGCATTGTAGGTGCCCG-TGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATGGGC 1817678 |||| ||||||| || || ||| | |||||| || | ||| || | ||||||| | Sbjct 30335 CGGCGTTGTAGG-GCGCGCACACGCACTCGTTGAAGCGGAAGGTCCGCCAGGGCATGACC 30277 Query 1817679 ACCACCTTGTG---CATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTT 1817728 ||| ||| |||| |||||| | |||| || |||||||| ||||| Sbjct 30276 TTGACCCGGTGGGCCATG---ATGGAGAGCTTGTGCAGGGAGGGCTGTCGGTT 30227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177149540391320