Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6464 109 6e-19 seq1319 109 6e-19 seq259 109 6e-19 seq802 98.7 1e-15 seq2149 91.5 1e-13 >seq6464 Length=44462 Score = 109 bits (120), Expect = 6e-19 Identities = 130/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || |||||||| ||||| |||||||| | ||||||||||| || || || || || || Sbjct 38433 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 38492 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || ||||| || || || | |||||| | |||||||| | ||||||| Sbjct 38493 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 38552 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT-TTTGTTTTTGT-TCAACG 134730 || || || || | || ||||||||||||||||| ||||| ||| |||||| Sbjct 38553 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATGGCTGTTTATGTATCAACG 38606 >seq1319 Length=24917 Score = 109 bits (120), Expect = 6e-19 Identities = 615/966 (64%), Gaps = 43/966 (4%) Strand=Plus/Minus Query 7464 CGTGCGCCACGAGCGCGATTACGATTACCGT---TATTTTGCCGTAAAAACTTTAAAAAA 7520 ||| || |||||||||||||| || | | ||||| | | | ||||| | || Sbjct 9955 CGTCCGACACGAGCGCGATTA---TTTCTTTGACTATTTCGGCTTCAAAACCATGGAACG 9899 Query 7521 CGGCTACTTGTTGAAAATCAACGGCGAATGC--GCGGAACGAATTCAACACATGCTGTTG 7578 | ||||||| |||| ||| |||| | | | ||| || || ||||||| || Sbjct 9898 AGCCTACTTGCTGAAGATCG--GGCGCAAGGTGGTGGAGCGCCCGCAGTACATGCTTCTG 9841 Query 7579 CGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATG 7638 |||||||| | || || || || || || | |||||||||||| || ||| | | Sbjct 9840 CGCGTGGCCCTTGGTATCCATGGAGAGGATCTGCCCGCCGCCTTGGAGACCTACGAGCTC 9781 Query 7639 ATGTCTTTGAAACA----GTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAA 7694 ||| | |||| ||| | ||||| || || || | || ||||||||| Sbjct 9780 ATGA----GCAACAAGTGGTTCATCCACGCCTCCCCTACTCTTTTCCACGCGGGCAC--- 9728 Query 7695 CGCG----CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACG 7750 ||| || || |||||||||| || | || |||||| | ||| |||| | Sbjct 9727 -GCGTTTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCATGCAAGCGGACTCGATCGTTG 9669 Query 7751 GCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG-AATAGGT 7809 | || ||| |||||||| | |||||| || ||| |||||| || ||| || Sbjct 9668 GTATCTACGACACGCTGAAGCAGTGCGCCGTGATAAGCAAGG-CGGCGGGGGGAATCGGC 9610 Query 7810 CTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCC 7869 || || || || | ||||| |||| | ||| | ||| || || | | Sbjct 9609 CTCTCGGTCCACAACATCCGCGCGCACGGCGCCTACATTAAGGGCACGAAGGGGACGAGC 9550 Query 7870 AGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGG 7929 | |||| | | ||||||| | | || ||| | | ||| ||| | || ||||||||| Sbjct 9549 AACGGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCAGGGG 9490 Query 7930 GGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTAC 7986 ||| ||| | ||| ||| ||||||||| |||||||||||||||||||||| | Sbjct 9489 GGAGGCAAGAGGCCAGGGGCCTTTGCCATCTACCTGGAGCCGTGGCACGCGGACATCTTT 9430 Query 7987 GCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTC 8046 | |||||| | ||||| ||| || || || || || ||||| ||| Sbjct 9429 GAAGTGCTGGACCTGCGGAAGAACCACGGAAAGGAGGAGGCGCGGGCCCGGGATCTCTTC 9370 Query 8047 TTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGAC-GCACAATGGTC 8105 | ||| | ||| | ||||| ||||| ||| | | || | || | || ||||| Sbjct 9369 TATGGACTATGGATTCCCGACCTGTTCATGGAGAGGGTGGAGGAGGATAGGACC-TGGTC 9311 Query 8106 GCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTT---GA 8162 |||||||| ||||||| ||||| | || |||| || || | Sbjct 9310 CCTCATGTGTCCCGATCAGTGCCCCGGTCTCGCGGACTGCCACGGC-CAGGCCTTCCGGG 9252 Query 8163 ACAATTGTACAAACAATACGAACACGACGGC-GCGTACGTGCGGCAAGTGAAAGCGCGCG 8221 || | | ||| |||||||| || ||| | || | | | |||| || | | Sbjct 9251 ACCTATATTTAAA--ATACGAACGAGAGGGCCGAGT-CAAGAAGACAGTGCGTGCTCAGG 9195 Query 8222 ACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACA 8281 || || ||||| | || | || | || || || | ||| ||||||||||||| Sbjct 9194 ACTTGTGGTTTGCCATCTTGGACTCGCAGATTGAGACGGGCACGCCCTACATGCTGTACA 9135 Query 8282 AAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATC 8341 | |||||||||||| || ||||| ||| ||| |||||||||| | ||||| Sbjct 9134 AGGACGCTTGCAACCTGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTCATCCAATC 9075 Query 8342 TGTGCGCTGAAATTGTACAGTACA-GCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCG 8400 ||||| | || || || || |||| | ||| | || || ||||| || ||||| || ||| Sbjct 9074 TGTGCACCGAGATCGTCCAATACACGAGCG-CGGAAGAGGTGGCGGTCTGCAACCTGGCG 9016 Query 8401 TCGGTG 8406 |||||| Sbjct 9015 TCGGTG 9010 >seq259 Length=12200 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAG 134556 ||||| || | ||||| || || || || |||||||||||||| | ||||| || | Sbjct 5791 TCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACG-TGCGCC 5733 Query 134557 AGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTT 134616 ||| || ||||| || || |||||||| | ||||||||||| || || || || || | Sbjct 5732 CGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCT 5673 Query 134617 TTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAA 134676 | || ||||| || || || || || | ||||| | ||||||||||| || | Sbjct 5672 TGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGA 5613 Query 134677 TGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || || | || ||||| || |||||||| Sbjct 5612 TGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 5576 >seq802 Length=4370 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 ||||| || | ||| | || || || || |||||||||||||| | || | ||| | Sbjct 272 CGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGC-GTGCGTCC 330 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 ||| || ||||| || ||||| ||||| | |||||||||||||| || ||||| || || Sbjct 331 GTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTT 390 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 |||||||| ||||| || || || | || ||| | || || || | || || Sbjct 391 GTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGAT 450 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || | || || ||||| || ||||| Sbjct 451 GGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 486 >seq2149 Length=43014 Score = 91.5 bits (100), Expect = 1e-13 Identities = 362/561 (65%), Gaps = 9/561 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | |||| ||||| | || || ||| || |||||||||| || || Sbjct 33336 CAGCACATGATCATGCGTGTGGCAATTGGTATCCACAAAGAGAACATTGACGCGGCGCTG 33395 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | | ||||| | |||| || ||||| ||| |||| || | || Sbjct 33396 GAGACCTACAATCTCATGTCGCTCAAACTTTTCACGCATGCTACGCCTACACTTTTCAAT 33455 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || |||||| |||| || ||| | ||||| || || | || |||||| || ||| Sbjct 33456 GCCGGCACAC-CGCGGCCCCAACTCTCCTCCTGCTTCCTCCTGACCATGAAGGAGGACTC 33514 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 |||||||||||| ||| |||| || | ||||| |||||||||| | || || Sbjct 33515 CATCGACGGCATCTACGACACCCTCAAGCAATGCGCTGCCATTTCCAAATTTGCGGGTGG 33574 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCA-TCGTGTCCACCAACG 7861 || || | | | || || | || || | | || ||||| | |||| Sbjct 33575 GATTGGCGTATCCATCCACAACATTCGGGCGCGAGACTCCTACATTCGTG-GATCGAACG 33633 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | | ||| ||| | | || ||| | ||||| ||||| | ||| || | || | Sbjct 33634 GCACCTCCAACGGCATCGTACCTATGCTCCGCGTTTTCAACGATACGGCCCGCTACGTCG 33693 Query 7922 ACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 ||||||| ||| |||||||| || || |||||||| | ||||| ||||| || | Sbjct 33694 ACCAGGGCGGAGGCAAGCGCAAGGGTTCCTTCGCCATCTACCTAGAGCCCTGGCATGCAG 33753 Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGA-AGACAGCAAAGCGCGC 8037 |||| | | | | || | |||||| ||| || ||| ||| || || Sbjct 33754 ACATCTTTGAATTCCTGGACCTGCGTAAGAACCACGGCAACGAGTTGGAGC-GTGCACGT 33812 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCA 8097 ||||| |||| || | ||| |||||| ||||| ||| ||||||| | ||||| Sbjct 33813 GATCTGTTCTACGCCCTCTGGACGCCCGACCTGTTCATGCGGCGCGTGGAGAGCGACGGG 33872 Query 8098 CAATGGTCGCTCATGTGCCCC 8118 | ||||| || | |||||| Sbjct 33873 GACTGGTCCCTTTTTTGCCCC 33893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505355062087200