Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq2348 747 0.0 >seq2348 Length=90098 Score = 747 bits (828), Expect = 0.0 Identities = 740/954 (78%), Gaps = 6/954 (1%) Strand=Plus/Plus Query 157703 AACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACT 157762 |||||||| || | |||||||||||||| | ||||| ||||| || | | || || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 157763 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAA 157822 | ||| |||||| |||| ||| |||| || || || || || || || || ||||| ||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 157823 CCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGT 157882 ||||| ||||| ||||| | || || |||||||| ||| | ||||| ||| |||| ||| Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 157883 TCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGG 157942 || ||||| || ||| | ||||||||||| | |||||||| || ||| | ||||| ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 157943 CTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCC 158002 || || ||||||||||||| ||||||||||||||| |||||| | | || | | | Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 63850 Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062 || ||||||||||| |||||||| ||||||||||| ||||| || ||||| | ||| Sbjct 63851 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 63910 Query 158063 GCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAA 158122 || | || |||||||| |||||||| |||||||||||| || | || || |||| ||| Sbjct 63911 GCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAA 63970 Query 158123 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158182 ||| ||||| |||| ||||||| | ||||||||||||||||| |||| |||| | ||| Sbjct 63971 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTA 64030 Query 158183 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158242 |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| || Sbjct 64031 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 64090 Query 158243 TTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGT 158302 || ||||||||| | ||| ||| |||||||| ||| || || || | | ||| Sbjct 64091 TTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGT 64150 Query 158303 GAAACGACTGAA-ACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAAGAAGAG 158359 ||| |||||| || | || | | ||||||||||| || || || ||||||||||| Sbjct 64151 GAA---ACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAA 64207 Query 158360 ACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 158419 || ||||||||||| || || || || ||||| || ||||| |||||||||||||| Sbjct 64208 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGT 64267 Query 158420 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 158479 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || |||||| Sbjct 64268 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 64327 Query 158480 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 158539 || || || ||||| | || |||||||||||| | ||||| |||||||||||||| Sbjct 64328 TTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAA 64387 Query 158540 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCT 158599 || | ||||| | || ||||||||| | ||||| ||||| || | | ||||| ||| Sbjct 64388 TCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCT 64447 Query 158600 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGAT 158653 | | | ||||||||||| ||||| || |||||||| ||||||||||| || ||| Sbjct 64448 GATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 64501 Score = 551 bits (610), Expect = 6e-152 Identities = 725/1002 (72%), Gaps = 2/1002 (0%) Strand=Plus/Minus Query 159391 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 159450 ||||||||| | ||||||||||| || || ||| | |||||||| || || || | || Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 159451 CCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGG 159510 || || || | | | || |||| || ||| | || || || |||||| | || |||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 159511 TACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCTCACGGCAGCTGT 159569 ||||| || || | ||| ||| ||| | || || ||| | || | | || | |||||| Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCT-TAACTGTAGCTGT 4909 Query 159570 CTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159629 ||||| ||||| || |||||||||||| | | || | ||||| || ||| | || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 159630 AGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGG 159689 ||| || || || ||| ||| | || || | ||| | ||||| || | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 159690 TGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGTCTAGTTGGTAT 159749 ||||| | | || || || |||| |||||||||||||||||||| || ||||| Sbjct 4788 GGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 4729 Query 159750 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCT 159809 ||||| || ||||| ||||| || || || ||||| || || || || |||||| | Sbjct 4728 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 4669 Query 159810 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 159869 |||||||| | || || | ||||||||||| |||||||| || || ||||| || Sbjct 4668 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 4609 Query 159870 CTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATAT 159929 || ||||||| || ||| | || |||||||| |||||||| || || || ||||| || Sbjct 4608 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 4549 Query 159930 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGT 159989 |||||| || || || || ||||||| ||||| || | |||||| ||||| |||||||| Sbjct 4548 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 4489 Query 159990 AGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTAC 160049 ||| |||||||| || |||||||| || || || ||||| || || || || Sbjct 4488 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAAC 4429 Query 160050 TCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160109 ||| |||||| |||||||| ||||| || || ||| | |||||||| || || || || Sbjct 4428 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTGG 4369 Query 160110 TGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 160169 |||||| ||||||||||| || ||||||||||| |||||||| ||||| || || | || Sbjct 4368 TGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGG 4309 Query 160170 TCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTT 160229 | |||||||| ||| |||| || | ||| | || || ||| | | || || || || Sbjct 4308 TTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTT 4249 Query 160230 CGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAA 160289 || ||| ||| || | ||||| |||||||| |||||||| || ||||| || || || Sbjct 4248 TGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAA 4189 Query 160290 CATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAA 160349 ||| |||| || ||||| || | | |||||||| | || |||||||||||||| Sbjct 4188 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAA 4129 Query 160350 CTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 ||| | ||||| ||||| || |||| | || ||||| || Sbjct 4128 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 4087 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 158821 TTATTCAGTGTGAGTCCGATCAGTACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATA 158880 ||||| | ||||| |||| | |||||| |||| ||||||||||| ||| |||| | Sbjct 24022 TTATTGATTGTGATGACGATGAATACATTTTAGATGCTGCAGAAGAAAACGGATTTGA-A 23964 Query 158881 TTAACT-ATTCCTGTCGTGCTGGTGCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGA 158939 || || |||| ||| | ||||| | ||||| | ||||| || | || | || Sbjct 23963 CTACCTTATTCTTGTAGATCTGGTTCTTGTTCAACTTGTGCAGGACGTGTAGTAGGTGGT 23904 Query 158940 ACTGTTGACCAAAGCGATCAGTCATTCTTGGATGATGATCAGATTGCAGAAGGATTTATC 158999 || |||| ||| || ||||| || || || || ||||| ||||||||||||| | Sbjct 23903 ACAATTGATCAATCAGAACAGTCGTTTTTAGAAGACGATCAAGTTGCAGAAGGATTCGTA 23844 Query 159000 CTTACGTGTGTATCTTATCCCACTTCTGATTGT 159032 | || ||||| |||||||| | ||||||||| Sbjct 23843 TTAACTTGTGTTGCTTATCCCGCATCTGATTGT 23811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572974863192000