Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq2348 704 0.0 >seq2348 Length=90098 Score = 704 bits (780), Expect = 0.0 Identities = 734/957 (77%), Gaps = 12/957 (1%) Strand=Plus/Plus Query 181008 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 181067 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 181068 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 181127 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 181128 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 181187 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| ||||| | Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 181188 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 181247 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 181248 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTA---T 181304 || || ||||||||||||| |||||| ||||| || |||||| | | || | || | Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGG--TGTAGCTT 63848 Query 181305 GCATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGT 181364 || ||||||||||||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct 63849 GC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 63907 Query 181365 GTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGT 181424 || || | ||| |||||||| || |||||| ||| |||||| || | || || |||| Sbjct 63908 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGA 63967 Query 181425 CAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTT 181484 |||||| |||||||| | ||||| | || ||||||||||| ||||||| |||| | Sbjct 63968 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTA 64027 Query 181485 GTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGT 181544 || ||||||||||| ||||||||||| ||||| || ||||| ||| ||||| || ||| Sbjct 64028 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 64087 Query 181545 GTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 181604 || |||||||| || | |||||||||||||| |||||| | || |||||| | || Sbjct 64088 GTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATC 64147 Query 181605 CGTGAGACGACTGAA-ACTGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAA 181661 ||||| || |||| || | || | | ||||| |||||||| || |||||||||||| Sbjct 64148 CGTGAAAC---TGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAA 64204 Query 181662 GAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCT 181721 || || ||||||||||| || || |||||||||||||| || || ||||||||||| || Sbjct 64205 GAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCA 64264 Query 181722 TCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATC 181781 ||||||||||||||| | | ||||||||| | || || ||||| || || || ||| Sbjct 64265 AGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATC 64324 Query 181782 TGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAAC 181841 ||||| || || || || | ||||| |||||||| ||| | || ||||||||||||||| Sbjct 64325 TGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAAC 64384 Query 181842 CAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGT 181901 || || | | || | ||||| ||||| ||||||| ||||| ||| | |||||||| Sbjct 64385 CAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGT 64444 Query 181902 GCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGAT 181958 || | | | || |||||||| |||||||| || ||||||||||||||||| || ||| Sbjct 64445 GCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 64501 Score = 423 bits (468), Expect = 2e-113 Identities = 701/1004 (70%), Gaps = 6/1004 (1%) Strand=Plus/Minus Query 182373 GACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 182432 || |||||| | ||||| ||||| || || ||| | |||||||| || || || | || Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 182433 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGG 182492 || || || | |||||| |||| || ||| | || || || |||||||||| |||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 182493 TACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 182551 ||||| || || | |||||||| || | || || ||| ||||| | || | |||||| Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 4909 Query 182552 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 182611 || || ||||| || |||||||||||| | | || | ||||| || ||| | || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 182612 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGG 182671 || |||| || ||| ||| | || ||| | |||| ||| || || | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 182672 TGCCTTCGCTCTCATTGGTTTCATGCTTAGG-CAATTTGAACTTGCTCGCCTGATTGGAA 182730 || || | | ||||| ||| || ||| | ||||||||| ||||||| || | || | Sbjct 4788 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 4730 Query 182731 TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCC 182790 | | || || ||||| ||||| ||||| || ||||| || |||||||| ||| ||| Sbjct 4729 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 4670 Query 182791 TCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGA 182850 | ||||||||||| ||||| | |||||| || || || ||||| || || || | Sbjct 4669 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 4610 Query 182851 TCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATA 182910 | ||| | ||||| || ||| | || |||||||| ||||||||||| || || ||||| | Sbjct 4609 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 4550 Query 182911 TGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAG 182970 ||||||| || || || || | ||||| ||||| | ||| || ||||| | || | Sbjct 4549 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 4490 Query 182971 TAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCA 183030 |||| || || || | |||||||| || || || ||||| || ||| | | Sbjct 4489 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAA 4430 Query 183031 CTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCG 183090 | || || || || ||||| ||||| |||||||| | || ||||||||||| || | Sbjct 4429 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTG 4370 Query 183091 GGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGG 183150 | ||||| ||| || || |||||| | || ||||| ||||| |||||||| || | | Sbjct 4369 GTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAG 4310 Query 183151 GTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATGAT 183209 || | ||| |||| |||| || | | || || |||| ||| | || ||||| Sbjct 4309 GTTTATGGACAAGTTCTTTTGGTAT-AGTAGGTTTAGCATTAAACTTAAGAGCATATGAC 4251 Query 183210 TTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAG 183269 ||||| ||||||| || | ||||| |||||||| || || || || ||||| || || Sbjct 4250 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 4191 Query 183270 AACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAA 183329 || ||| | | || ||||| | | | ||| |||| | || |||||||||||| Sbjct 4190 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 4131 Query 183330 AACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 || || | ||||| || || ||| |||| | || ||||| || Sbjct 4130 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 4087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614564896540800