Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2348 722 0.0 >seq2348 Length=90098 Score = 722 bits (800), Expect = 0.0 Identities = 761/996 (76%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 ||||| | || || || ||| |||| || | || ||| | ||| ||||||||||| Sbjct 63515 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 63574 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTG 174578 |||||| ||||||| |||||||| ||| | || || || ||||| ||||||||| | Sbjct 63575 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 63634 Query 174579 GGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTAT 174638 | || || ||||| || ||||| || |||||||||||||| ||||| ||||| | || Sbjct 63635 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 63694 Query 174639 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTC 174698 ||||||||||| ||| | ||||| ||| |||| ||||| ||||| || ||| | |||||| Sbjct 63695 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 63754 Query 174699 TACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAA 174758 |||||| | |||||||| || | | ||||||||||| |||||||||||||||| |||| Sbjct 63755 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 63814 Query 174759 CTAGTTGTCTTCCACTTCCTTATT-GGTATCTACGCCTATATGGGACGTGAGTGGGAACT 174817 || || || || ||||| |||||| ||| | ||| ||||||||||| |||||||| Sbjct 63815 CTTGTAGTATTACACTT-CTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACT 63873 Query 174818 CTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGC 174877 || |||||||| ||| | |||||||| | ||||| | ||| || ||||| || || Sbjct 63874 TAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGC 63933 Query 174878 AGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCC 174937 ||| ||||||||| || | || || |||| |||||| ||||| || | ||||| Sbjct 63934 AGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCC 63993 Query 174938 CTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTT 174997 || ||||||||||| || ||||||| |||||| || |||||||||||||| ||||| | Sbjct 63994 TTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCT 64053 Query 174998 GATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGC 175057 |||||||| ||||| ||| || || || ||||| || ||||| || || ||| || Sbjct 64054 TATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGC 64113 Query 175058 GATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAA-ACTGAGTCAC 175116 ||||||||||| ||||| || ||| | ||||||| ||||||| || | || | Sbjct 64114 AATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTATC 64170 Query 175117 AG--AACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCA 175174 | ||||| |||||||| || || ||||||||||| || || |||||||| || || || Sbjct 64171 TGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 64230 Query 175175 TGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCA 175234 || ||||| || ||||| |||||||||||||| |||||||||||||| | | || Sbjct 64231 CGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACA 64290 Query 175235 CTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCAC 175294 |||||||||||| || ||||||||||| ||||||||||| || || ||||| || ||| Sbjct 64291 CTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCAC 64350 Query 175295 AATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAG 175354 ||||||||||||| | || || |||||||||||||| || ||| | || | |||||| | Sbjct 64351 AATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCG 64410 Query 175355 AGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCA 175414 || | ||||| ||||| || || | ||| | |||| | | || |||||||||||||| Sbjct 64411 TGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCA 64470 Query 175415 TGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 || | || || ||||||||||| |||||||| || Sbjct 64471 CGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 64506 Score = 459 bits (508), Expect = 4e-124 Identities = 700/988 (71%), Gaps = 12/988 (1%) Strand=Plus/Minus Query 175879 GAGATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTTG 175938 ||||| | || | |||||||| ||||| || | || | |||| || || | ||||| Sbjct 5071 GAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTTCCAACAGCATTTCTTG 5012 Query 175939 CCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTG 175998 | |||| || ||| | || || || |||||||| || ||||||||| ||||| | | Sbjct 5011 CAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGGTACACACATGGATTAG 4952 Query 175999 CTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGAT 176057 ||||||| || | ||||| ||| ||||| | || | ||||| || || ||||| || Sbjct 4951 CTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGTATCAACACCTGCAAAT 4893 Query 176058 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGG 176117 |||||||||||| | | || | ||||| || || | || || || || || Sbjct 4892 AGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACAAGGAGATTTTACTCGT 4833 Query 176118 TGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATT 176177 ||||| ||| | || || | ||| | ||||| || | || || || || | | ||| Sbjct 4832 TGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGGGGCATTTGGATTAATT 4773 Query 176178 GGATTCATGCTT-CGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGC 176236 |||||| || || || || |||||| | || | || | ||||| ||||| || || || Sbjct 4772 GGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTATTCGTCCGTATAATGC 4714 Query 176237 TATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGG 176296 |||||||| || |||||||| ||||| || ||| || | | || || |||| Sbjct 4713 AATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTTAATCTATCCTTTAGG 4654 Query 176297 TCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATT 176356 ||| | ||||||||||| || ||||| || ||||| || || |||||||||| Sbjct 4653 ACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTATTTTCCGATTCCTATT 4594 Query 176357 GTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGG 176416 || | || |||||||| ||||||||||| || || ||||| |||||||| || || || Sbjct 4593 ATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACATGATGGGTGTAGCAGG 4534 Query 176417 TATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATA 176476 || ||||||| |||||| |||||||||| ||||| | |||||| ||||| || ||| Sbjct 4533 AATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGTAGAAAACACATTATT 4474 Query 176477 TGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGAC 176536 |||||||| || || || ||| ||| ||| | || || ||||| || Sbjct 4473 CGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAACACAATCAGAAGAAAC 4414 Query 176537 CTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAA 176596 ||||| ||||| || |||||| | |||||||| ||||| || || ||||| ||| ||| Sbjct 4413 TTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTGGTGTTGCTTTTTCTAA 4354 Query 176597 TAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAG 176656 || ||||||||||| ||||| ||||| ||||| || || | ||| | ||| |||| Sbjct 4353 CAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGG---ACAAG 4297 Query 176657 ---TATTGGCATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATGATTTTGTGAGCCAAG 176712 | |||| || | | || || |||| ||| | || ||||| ||||| |||| Sbjct 4296 TTCTTTTGGTAT-AGTAGGTTTAGCATTAAACTTAAGAGCATATGACTTTGTATCTCAAG 4238 Query 176713 AGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTA 176772 || || | ||||| |||||||| || |||||||||||||| || || || ||| | | | Sbjct 4237 AGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAATATCTTATTAA 4178 Query 176773 ACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCC 176832 ||||||| | ||| |||||||||| | ||| ||||||||||| |||||||||| Sbjct 4177 ACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAATTTTGTATTCC 4118 Query 176833 CAGAAGAAGTTCTACCTAGAGGTAACGC 176860 |||| || ||| |||| | || ||||| Sbjct 4117 CAGAGGAGGTTTTACCACGTGGAAACGC 4090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729867008536800