Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq2348 710 0.0 >seq2348 Length=90098 Score = 710 bits (786), Expect = 0.0 Identities = 735/956 (77%), Gaps = 10/956 (1%) Strand=Plus/Plus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 177936 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 177995 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 177996 CCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCT 178055 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| ||||| | Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 178056 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 178115 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 178116 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTG--GTATCTATG 178173 || || ||||||||||||| |||||| |||||||| |||||| | | | ||| || || Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 63849 Query 178174 CATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTG 178233 | |||||||||||||| ||||||||| ||||||||||| ||||| || ||||| | | Sbjct 63850 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 63908 Query 178234 TAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTC 178293 |||| | ||| ||||||||||| |||||| ||||||||| | | || || |||| | Sbjct 63909 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 63968 Query 178294 AAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTG 178353 ||||| || ||||| | ||||| | || ||||||||||| ||||||| |||| | | Sbjct 63969 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 64028 Query 178354 TTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTG 178413 | ||||||||||||||||||||||| |||||||| ||||| ||| ||||| || |||| Sbjct 64029 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 64088 Query 178414 TATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTC 178473 | || ||||| || | |||||||||||||| |||||| | || |||||| | | | Sbjct 64089 TGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCC 64148 Query 178474 GTGAAACGACTGAA-AC--AGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAG 178530 ||||| |||||| || | ||| ||||| ||||| || || ||||||||||||| Sbjct 64149 GTGAA---ACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAG 64205 Query 178531 AGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTT 178590 | || ||||||||||| || ||||| || ||||| || ||||| ||||||||||| || Sbjct 64206 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAA 64265 Query 178591 CATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCT 178650 ||||||||||||||| | | ||||||||| | || || ||||| || || || |||| Sbjct 64266 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 64325 Query 178651 GGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACC 178710 |||| || || || || | ||||| |||||||| ||| | || |||||||||||||||| Sbjct 64326 GGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACC 64385 Query 178711 AGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTG 178770 | || | | || | ||||| ||||| ||||||| ||||| ||| | ||||||||| Sbjct 64386 AATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 64445 Query 178771 CCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGAT 178826 | | | | || |||||||| |||||||| || ||||||||||||||||| || ||| Sbjct 64446 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 64501 Score = 464 bits (514), Expect = 8e-126 Identities = 706/1000 (71%), Gaps = 4/1000 (0%) Strand=Plus/Minus Query 179235 GACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179294 || |||||| | ||||| ||||| || || ||| | |||||||| || || || | || Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 179295 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGG 179354 || || || | |||||| |||| || ||| | || || || |||||||||| |||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 179355 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCAGCTGT 179413 ||||| || || | ||| ||| || | ||||| ||| ||||| | || | |||||| Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 4909 Query 179414 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 179473 || || ||||| || |||||||||||| | | || | ||||| || ||| | || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 179474 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGG 179533 || |||| || ||| ||| | || ||| | |||| ||| || || | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 179534 TGCCTTCGCTCTCATTGGTTTCATGCTTAGG-CAATTTGAACTTGCTCGCCTGATTGGTA 179592 || || | | ||||| ||| || ||| | ||||||||| ||||||| || | |||| Sbjct 4788 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 4730 Query 179593 TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCC 179652 | | || || ||||| ||||| ||||| || ||||| || |||||||| ||| ||| Sbjct 4729 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 4670 Query 179653 TCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGA 179712 | ||||||||||| ||||| | |||||| || || || ||||| || || || | Sbjct 4669 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 4610 Query 179713 TCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATA 179772 | ||| | ||| | | ||| | || |||||||| |||||||| || || || ||||| | Sbjct 4609 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 4550 Query 179773 TGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTG 179832 ||||||| || || || || |||| || ||||| | ||| || ||||||| ||||| Sbjct 4549 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 4490 Query 179833 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGA 179892 |||| || ||||| | |||||||| || || ||||| || || || | | Sbjct 4489 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAA 4430 Query 179893 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 179952 |||| |||||| |||||||| ||||| || || ||| | |||||||| || || || | Sbjct 4429 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTG 4370 Query 179953 GTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 180012 || |||| ||||||||||| || ||||||||||| |||||||| ||||| || || | | Sbjct 4369 GTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAG 4310 Query 180013 GTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 180072 || |||||||| ||| |||| || | ||| | || | ||| | | || || || | Sbjct 4309 GTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACT 4250 Query 180073 TCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGA 180132 | ||| ||| ||| | | ||||| |||||||| || ||||| || ||||| || || | Sbjct 4249 TTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAA 4190 Query 180133 ACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGT 180192 | || | | || ||||| | | ||||| |||| || || ||||||||||| Sbjct 4189 ATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAA 4130 Query 180193 CATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 || ||||||||||| || ||| | ||| | || || || Sbjct 4129 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 4090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605957634676800