Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq2348 708 0.0 >seq2348 Length=90098 Score = 708 bits (784), Expect = 0.0 Identities = 734/955 (77%), Gaps = 10/955 (1%) Strand=Plus/Plus Query 158406 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 158465 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 158466 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 158525 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 158526 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 158585 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| | ||| | Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 158586 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 158645 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 158646 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATG 158703 || || ||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 63849 Query 158704 CATATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTG 158763 | || ||||||||||||||||||||| ||||| ||||| ||||| || ||||| | | Sbjct 63850 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 63908 Query 158764 TAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTC 158823 |||| | || || ||||| ||||||||| ||| |||||| | | || || |||| | Sbjct 63909 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 63968 Query 158824 AAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 158883 ||||| ||||| |||| ||||||| | ||||||||||||||||| |||| |||| | | Sbjct 63969 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 64028 Query 158884 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158943 |||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | Sbjct 64029 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 64088 Query 158944 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC 159003 | || ||||||||| | ||| ||| |||||||| ||| || || || | | | Sbjct 64089 TGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCC 64148 Query 159004 GTGAAACGACTGAA-ACAGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAG 159060 ||||||| |||| || | || | | ||||| |||||||| || ||||||||||||| Sbjct 64149 GTGAAAC---TGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAG 64205 Query 159061 AAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTT 159120 |||| || || ||||| || || || |||||||| || ||||| |||||||||||||| Sbjct 64206 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAA 64265 Query 159121 CATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCT 159180 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || |||| Sbjct 64266 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 64325 Query 159181 GGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACC 159240 |||| || || ||||| | || |||||||||||| | ||||| ||||||||||||| Sbjct 64326 GGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACC 64385 Query 159241 AGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTG 159300 | || | ||||| | || ||||||||| | ||||| ||||| || | | ||||||| Sbjct 64386 AATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 64445 Query 159301 CAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 159355 | | | | ||||||||||| ||||| || |||||||| ||||||||||| || || Sbjct 64446 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 488 bits (540), Expect = 6e-133 Identities = 724/1021 (71%), Gaps = 4/1021 (0%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 |||||| || |||| |||||| | ||||| ||||||||||| ||| |||| ||||| || Sbjct 5099 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 5040 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 ||| | | |||| || || | |||||| |||| || ||| | || || || ||||| Sbjct 5039 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 4980 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 160077 | || ||||| || |||||| | ||| ||| || | ||||| ||||| ||| | Sbjct 4979 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAA-CTTCTT 4921 Query 160078 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC-TGGG 160136 || | | || || || || | |||||||||||| || |||| | |||| Sbjct 4920 AACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCA-TTGATCTTATTATGGG 4862 Query 160137 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTG 160196 | || ||||| ||||| ||||| | ||| | ||| | || ||| | |||| ||||| Sbjct 4861 GACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTG 4802 Query 160197 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 160256 | ||| | ||||| || || | ||||||||||| | || || |||||| | || | Sbjct 4801 TCGCATTACATGGGGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTC 4742 Query 160257 GTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG 160316 |||| | ||||| ||||| || ||||| ||||| || || || ||||| || || || | Sbjct 4741 GTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCG 4682 Query 160317 TCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 160376 | |||||| | ||||| || || || || | |||||||| || ||||| |||| Sbjct 4681 TTTCTGTATTCTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTG 4622 Query 160377 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTA 160436 | || ||||| || || ||||||| || ||| | ||||| || || |||||||| |||| Sbjct 4621 GAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 4562 Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496 | || ||||| |||||||| || || || || |||| || ||||| | ||| || | Sbjct 4561 ATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTC 4502 Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556 |||| | ||||||||| |||||| | | |||||||| || || ||||| || | Sbjct 4501 ATGGAGCTACTGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTG 4442 Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616 | || | ||||| |||||| |||||||| ||||| || || ||| | ||||||| Sbjct 4441 CTTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGT 4382 Query 160617 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160676 | || || || ||| |||| ||||||||||| || ||||||||||| |||||||| |||| Sbjct 4381 CACAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 4322 Query 160677 TGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 160736 | || || | ||| | |||||| | |||| || | ||| | || | || | Sbjct 4321 TTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAA 4262 Query 160737 GTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160796 | || || || || || ||||||| || | ||||| ||||||||||||||||| || | Sbjct 4261 GAGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTT 4202 Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 160856 |||| || || || ||| || | || ||||| | | ||||| | || | |||| Sbjct 4201 TCTATACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACC 4142 Query 160857 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 |||| ||||| || ||| | |||||||| || ||| | || | || ||||||||||||| Sbjct 4141 AACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 4082 Query 160917 A 160917 | Sbjct 4081 A 4081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552426225388800