Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2348 747 0.0 >seq2348 Length=90098 Score = 747 bits (828), Expect = 0.0 Identities = 763/990 (77%), Gaps = 8/990 (1%) Strand=Plus/Plus Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911 ||||| | |||||| ||| | || ||| | || ||||| || | ||||||||| Sbjct 63515 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 63574 Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTTGCTTTCGTA 178971 ||||| | ||||| ||||| || | | || || | ||| |||||| | |||||| | Sbjct 63575 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 63634 Query 178972 GCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179031 ||||||||||| || ||||| || || ||||||||||| || ||||| ||||| | || Sbjct 63635 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 63694 Query 179032 GGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTC 179091 ||||||||||| ||| | ||||| ||| | |||||||| ||||| |||||| | |||||| Sbjct 63695 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 63754 Query 179092 TACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAA 179151 ||||| | |||||||| || || | || || ||||| || ||||||||||||| |||| Sbjct 63755 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 63814 Query 179152 CTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTT 179211 || ||||| || |||||| | | || | | ||| ||||||||||| ||||||||| Sbjct 63815 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 63874 Query 179212 TCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCT 179271 |||||| |||| |||||||| ||||| | || || | ||| || ||||| ||||| Sbjct 63875 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 63934 Query 179272 GCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCT 179331 || |||||||||||| | | || || |||| |||||| |||||||||| ||||||| Sbjct 63935 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 63994 Query 179332 CTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTT 179391 | ||||||||||||||||| |||| |||| | ||||||||||||||||||||||| ||| Sbjct 63995 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 64054 Query 179392 ATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCT 179451 |||||||| ||||||||| ||||||||||| || || ||||||||| | ||| ||| Sbjct 64055 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 64114 Query 179452 ATGCACGGAAGTCTCGTTACTTCCTCGCTT-GTTCGTGAAACAACTG-AGACAGAGTCAC 179509 ||||| || ||| || || | || | || | ||||| ||||| |||| | || | Sbjct 64115 ATGCATGGTTCTCTTGTAACAT-CTAGTTTAATCCGTGA---AACTGAAGACGGTGTATC 64170 Query 179510 AG--AACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACA 179567 | ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| Sbjct 64171 TGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 64230 Query 179568 TGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCA 179627 || ||||| || ||||| ||||||||||| ||| || ||||||||||| |||| || Sbjct 64231 CGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACA 64290 Query 179628 CTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAAC 179687 ||||||| | ||||| ||||| ||||| || |||||||| ||||||||||| | || Sbjct 64291 CTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCAC 64350 Query 179688 CATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACG 179747 ||||| |||||| | ||||| |||||||||||||| || | |||| | ||||| || Sbjct 64351 AATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCG 64410 Query 179748 TGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCA 179807 ||| | ||||| ||||| ||| | | |||||||| | ||| ||||||||||| ||||| Sbjct 64411 TGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCA 64470 Query 179808 TGAGCGTAACGCACACAACTTCCCACTCGA 179837 || |||||||| ||||||||||| || || Sbjct 64471 CGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 479 bits (530), Expect = 3e-130 Identities = 707/999 (71%), Gaps = 2/999 (0%) Strand=Plus/Minus Query 180033 GACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTT 180092 || |||||| | ||||| || || || |||||| | || ||||| || || || | || Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 180093 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 180152 || || || | |||||| |||| || ||| | || || || ||||||| || |||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 180153 TACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 180211 ||||| || || | |||||||| || | || || ||| ||||| | || | |||||| Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 4909 Query 180212 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 180271 || || ||||| | |||||||||||| | | || | ||||| || ||| | || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 180272 GGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGG 180331 || |||| || ||| ||| | || ||| | |||| ||| || || | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 180332 TGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTAT 180391 || || | |||||||||| |||| || |||||| | || |||||| | ||||| Sbjct 4788 GGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 4729 Query 180392 CCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCT 180451 ||||| || ||||| |||||||| || || |||||||| ||||| || ||||| | Sbjct 4728 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 4669 Query 180452 CATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAAT 180511 ||||| || | || || | ||||||||||||||||| |||||| || ||||| || Sbjct 4668 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 4609 Query 180512 CTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATAT 180571 || |||||||| | || | || |||||||| |||||||| || || || ||||| || Sbjct 4608 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 4549 Query 180572 GATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGT 180631 |||||| || || || || ||||||| ||| | |||| ||||| ||||| | ||||| Sbjct 4548 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 4489 Query 180632 GGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAAC 180691 || |||||| | | |||||||| || || || || || || || |||| Sbjct 4488 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAAC 4429 Query 180692 GCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 180751 ||| || |||||||| || ||||| || || ||| | |||||||| || || || || Sbjct 4428 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTGG 4369 Query 180752 TATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 180811 | |||| ||||||||||| || ||||||||||| |||||||| ||||| || || | || Sbjct 4368 TGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGG 4309 Query 180812 TCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 180871 | |||||||| ||| |||| || | ||| | || | ||| | | || || || || Sbjct 4308 TTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTT 4249 Query 180872 CGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAA 180931 || ||||||| | | ||||| |||||||| || || || || ||||| || || || Sbjct 4248 TGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAA 4189 Query 180932 CATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAA 180991 ||| |||| || ||||| | | ||||| |||| | || |||||||| ||||| Sbjct 4188 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAA 4129 Query 180992 CTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || | ||||| || || ||| ||||| | || ||||| Sbjct 4128 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 4090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610277264236800