Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq2348 87.8 4e-12 >seq2348 Length=90098 Score = 87.8 bits (96), Expect = 4e-12 Identities = 172/243 (71%), Gaps = 15/243 (6%) Strand=Plus/Plus Query 332036 TAATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTAC 332095 |||||| |||| |||||||| || ||||||||| ||||||||| ||||| Sbjct 89469 TAATGCTGGATCTCGCTCGATATACTTTTTATATTCATCGGTTGTTGTTGCTCCAATGCA 89528 Query 332096 ACGAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATT-GCT-CATGTCCATAGAACCA 332153 | || | || | || || |||||||||||||||| ||| ||| |||| | || Sbjct 89529 TCTAAATTTTCCTCTCGATAGAACTGGCTTAAGCATATTTGCTGCAT--CCATTGTCCCT 89586 Query 332154 TTACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTAT-T 332212 | ||| || |||||||| | | | ||||||||||||||||||| | |||||||| Sbjct 89587 TC---TGCCGATCCAGCCCCTATTAAAGTATGAATTTCATCAATGAATAAAATAGTATCA 89643 Query 332213 TTCACGT-TTCTTTA-GTTCTTTTAGCAAATTGTCGATGCGT-TCTTCAAATTCACCACG 332269 || | || | | ||||| ||| ||| || || || | |||||||||||||| || Sbjct 89644 GGGACATCTTGTGCATGTTCTATTA--AAA--GTTGAAGCCTCTCTTCAAATTCACCTCG 89699 Query 332270 ATA 332272 ||| Sbjct 89700 ATA 89702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113732501269280