Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2149 84.2 7e-11 seq1319 84.2 7e-11 >seq2149 Length=43014 Score = 84.2 bits (92), Expect = 7e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| |||| ||| |||| || |||||| | ||| ||||||||||| || || || Sbjct 33644 CGGCATCGTACCTATGCTCCGCGTTTTCAACGATACGGCCCGCTACGTCGACCAGGGCGG 33703 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACAT 255084 ||||| ||| || | ||| |||||||||| ||||| ||||| || ||||| Sbjct 33704 AGGCAAGCGCAAGGGTTCCTTCGCCATCTACCTAGAGCCCTGGCATGCAGACAT 33757 >seq1319 Length=24917 Score = 84.2 bits (92), Expect = 7e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| || | || ||| || | ||| |||||||| || || ||||| ||||| | Sbjct 9537 CCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCAGGGGGGAGGCAAGAGG 9478 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACAT 255084 ||||| || || ||||||||||||||||||||||||| ||||| Sbjct 9477 CCAGGGGCCTTTGCCATCTACCTGGAGCCGTGGCACGCGGACAT 9434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588196395192700