Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2149 154 2e-32 seq1319 109 7e-19 seq441 105 8e-18 seq4979 84.2 3e-11 >seq2149 Length=43014 Score = 154 bits (170), Expect = 2e-32 Identities = 582/902 (65%), Gaps = 21/902 (2%) Strand=Plus/Minus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | || || || || | ||||| || || || ||||| |||| ||| Sbjct 34141 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 34082 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||| |||||| || |||||| | |||||||| ||||| || |||||| ||| Sbjct 34081 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 34022 Query 111398 GATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTAC--AATGGCGTTGGC--CCGTCC 111453 || | ||||| || ||| | || ||||| | ||| | ||| | ||| Sbjct 34021 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCC 33967 Query 111454 CTC-CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 111512 | | | |||||| | | |||||| | ||||||||| || | |||| | || | Sbjct 33966 CACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGC 33907 Query 111513 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGA 111572 | || || || || || ||||| ||||| | || | ||| || ||| ||||| Sbjct 33906 CCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGA 33847 Query 111573 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCT 111631 | ||||| || |||| |||| | || ||||| | | ||| | || |||| || Sbjct 33846 ACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCAC-GCTCCAACTCGTTGCCG 33788 Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691 ||||| || | || ||||| || | ||| || || ||||| ||||| || |||| Sbjct 33787 TGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATG 33728 Query 111692 GCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 111748 |||| || ||||| || ||| | | || | || ||||| || || |||| || Sbjct 33727 GCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAA 33668 Query 111749 ACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATT 111806 ||||| ||||| || | || || | || || || | || ||||| | ||| Sbjct 33667 ACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAG--- 33611 Query 111807 TATTG-GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865 | | | || | | | |||||| | ||||| || || || | || || || Sbjct 33610 TCTCGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGCA 33551 Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925 || || | | | || || | ||||| |||| ||| ||||||||||| ||| | ||| Sbjct 33550 GCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGG 33491 Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985 ||||| ||| | || || | ||||| || |||||||| || || || || || || Sbjct 33490 AAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGC 33431 Query 111986 ATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 112045 |||| | | ||||| | ||| ||||||| | | ||||||| || | Sbjct 33430 GTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTG 33371 Query 112046 TGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCG 112105 ||||| || ||||| || ||||||| ||||| ||| ||| ||||| | | || | Sbjct 33370 TGGATACCAATTGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTC 33311 Query 112106 AGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCC 112165 | | |||| || ||| || || ||||| | |||||||| || ||||| ||||| Sbjct 33310 ATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCC 33251 Query 112166 CG 112167 || Sbjct 33250 CG 33249 >seq1319 Length=24917 Score = 109 bits (120), Expect = 7e-19 Identities = 293/448 (65%), Gaps = 0/448 (0%) Strand=Plus/Plus Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || |||| ||||| || ||| ||| ||| ||||| | | || || || || Sbjct 9014 GACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCAC 9073 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | ||||| ||| || || ||||| |||| |||||| |||||| |||||| || ||| Sbjct 9074 AGATTGGATGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTCC 9133 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACA 111421 ||||| |||||||||||||| |||||||| |||| || | | || || ||| | Sbjct 9134 TTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCACAAG 9193 Query 111422 TCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 111481 || || | || | ||| | || ||||| ||||| ||| || ||| | Sbjct 9194 TCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAGGTCC 9253 Query 111482 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 111541 || ||| || ||| | |||||| || || || ||||| | || ||| Sbjct 9254 CGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAGGGAC 9313 Query 111542 CATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 111601 || | | | ||||| |||| || |||||| ||||| |||||||| || | ||| Sbjct 9314 CAGGTCCTATCCTCCTCCACCCTCTCCATGAACAGGTCGGGAATCCATAGTCCATAGAAG 9373 Query 111602 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 111661 ||||| | ||| ||||| || | || ||||| || | || || | || | | Sbjct 9374 AGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTCAAAG 9433 Query 111662 ATATCCGCGTGCCATGGCTCAAGATAGA 111689 || ||||||||||| ||||| || |||| Sbjct 9434 ATGTCCGCGTGCCACGGCTCCAGGTAGA 9461 >seq441 Length=67861 Score = 105 bits (116), Expect = 8e-18 Identities = 300/456 (66%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 ||||| || || |||||||| || | ||| | || | || || | ||||| ||||| Sbjct 41008 CGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGCG 40949 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || || || | || |||| | || ||||| ||||||||||| || | || || Sbjct 40948 GCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTTC 40889 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCT--GGCATACCACCAGCACTGCGTTGCTTGCCCA 11627 | || || || | ||| || || || |||| | | | || | ||| || ||||| Sbjct 40888 AGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAAGCCC--GCCCCGCGCTGACGGCCCA 40831 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGATTTCA 11683 | ||||||||||| || || || | || ||||| || | ||||| | ||| Sbjct 40830 CGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTCG 40775 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | |||||| || | ||||||||| || ||||||||||| ||||| | | | | Sbjct 40774 AACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCCG 40715 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 | | | |||||| || || || || ||||||| |||| || || || ||||| Sbjct 40714 GCGGCCGAGATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGTCTTA 40655 Query 11804 CCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-ACTTCCAAA 11862 ||||| || || || | | | | || || |||||||| || || || ||| Sbjct 40654 CCCGTCCCGGGGGGTCCGTCCAAGATCACCCCGCGAGGGATCTTTGCGCCTACGTCC-GT 40596 Query 11863 ATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||| | ||||| | |||||| || || || | ||| Sbjct 40595 GTATTTTTCGGGGTTCTTGAGGAAGTCAACTACCTC 40560 >seq4979 Length=17524 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || ||||||||||||||||| |||| | |||||| || |||||||| ||||| Sbjct 9949 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 10008 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 |||||||| ||||| || | | ||| ||||| || || Sbjct 10009 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGA 10049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627978146256000