Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1319 141 1e-28 seq2149 132 6e-26 seq441 125 8e-24 >seq1319 Length=24917 Score = 141 bits (156), Expect = 1e-28 Identities = 520/803 (65%), Gaps = 11/803 (1%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||||||||| | ||||||||||| | ||||| ||||| || || | | | Sbjct 9859 CCCGCAGTACATGCTTCTGCGCGTGGCCCTTGGTATCCATGGAGAGGATCTGCCCGCCGC 9800 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 ||||||||| ||||| ||| | | | || |||||| ||||| | || || || | Sbjct 9799 CTTGGAGACCTACGAGCTCATGAGCAACAAGTG-GTTCATCCACGCCTCCCCTACTCTTT 9741 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 || | || || || | || || |||||| |||||||| | |||| | | || Sbjct 9740 TCCACGCGGGCACGCGTTTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCATGCAAGCGG 9681 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| ||| |||||||| | || || | | |||| || || ||| ||| | Sbjct 9680 ACTCGATCGTTGGTATCTACGACACGCTGAAGCAGTGCGCCGTGATAAGCAAGGCGGCGG 9621 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 |||| || || | |||| | | | || | | ||| ||| || | Sbjct 9620 GGGGAATCGGCCTCTCGGTCCACAACATCCGCGCGCACGGCGCCTACATTAAGGGCACGA 9561 Query 104520 ATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 | || | | || | ||| | | || ||||| | || || ||| ||| |||||||| Sbjct 9560 AGGGGACGAGCA-ACGGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTAC 9502 Query 104579 GTAAATCAAGCTGG--GC--GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 || | || | || || | | |||| || | || |||| || ||||| ||||| Sbjct 9501 GTGGACCAGGGGGGAGGCAAGAGGCCAGGGGCCTTTGCCA-TCTACCTGGAGCCGTGGCA 9443 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 |||||| ||| | || | || || |||| ||||| || | |||||||||||| Sbjct 9442 CGCGGACATCTTTGAAGTGCTGGACCTGCGGAAGAACCACGGAAAGGAGGAGGCGCGGGC 9383 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| |||||||||| | || |||||||| || || |||||| |||| || |||||| Sbjct 9382 CCGGGATCTCTTCTATGGACTATGGATTCCCGACCTGTTCATGGAGAGGGTGGAGGAGGA 9323 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTG 104813 | | | ||||| ||| | ||||| || || || |||||| | || |||| || Sbjct 9322 TAGGACCTGGTCCCTCATGTGTCCCGATCAGTGCCCCGGTCTCGCGGACTGCC-ACGGCC 9264 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 ||| || | ||| || ||| ||||| ||| || || | | ||| |||| Sbjct 9263 AGGCCTTCCGGGACCTATATTTAAAATACGAACGAGAGGGCCGAGTCAAGAAGACAGTGC 9204 Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 ||| || ||||| || || | | || || | ||||| || || || |||| Sbjct 9203 GTGCTCAGGACTTGTGGTTTGCCATCTTGGACTCGCAGATTGAGACGGGCACGCCCTACA 9144 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| ||||| ||||| || |||| ||||| || ||| |||| ||||| |||||| Sbjct 9143 TGCTGTACAAGGACGCTTGCAACCTGAAGAGCAACCAACAGAACTTGGGCACCATCAAGT 9084 Query 104994 GTTCCAATCTCTGTACAGAAATC 105016 |||||||| || || || ||| Sbjct 9083 CATCCAATCTGTGCACCGAGATC 9061 >seq2149 Length=43014 Score = 132 bits (146), Expect = 6e-26 Identities = 533/822 (65%), Gaps = 33/822 (4%) Strand=Plus/Plus Query 104213 ATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATT 104272 ||||| ||| ||| ||||| ||||||| ||||| || ||||| || || ||||| Sbjct 33324 ATGGAGCGCCCCCAGCACATGATCATGCGTGTGGCAATTGGTATCCACAAAGAGAACATT 33383 Query 104273 GATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCA 104332 || | | ||||||| ||| | ||||| | | |||| || || || || Sbjct 33384 GACGCGGCGCTGGAGACCTACAATCTCATGTCGCTCAAACTTTTCACGCATGCTACGCCT 33443 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 || || |||||||| || ||||| | |||||| | ||| |||||||| | ||| Sbjct 33444 ACACTTTTCAATGCCGGCACACCGCGGCCCCAACTCTCCTCCTGCTTCCTCCTGACCATG 33503 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 ||||||||||| ||| |||| ||||| | || || | | | || || || || || Sbjct 33504 AAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAGCAATGCGCTGCCATTTCCAAA 33563 Query 104453 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC-CAATAAATCTCGT--ATT 104509 | || || || ||||| | |||||| | | | || | | | ||| | ||| Sbjct 33564 TTTGCGGGTGGGATTGGCGTATCCATCCACAACATTCGGGCGCGAGA---CTCCTACATT 33620 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || || | || || || | || || | || ||||| ||||| || |||| || Sbjct 33621 CGTGGATCGAACGGCACCTCCAACGGCATCGTACCTATGCTCCGCGTTTTCAACGATACG 33680 Query 104570 GCGCGCTATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || ||||| || | || | | ||| || ||||| || |||| |||| || ||| Sbjct 33681 GCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGGTTCCTTCGCCATCTACCTAGAG 33740 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 || ||||| || || ||| | || ||||| || ||||| ||||| || ||||| | Sbjct 33741 CCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCGTAAGAACCACGGCAACGAGTTG 33800 Query 104687 GCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | || |||| || ||||| |||| ||| ||||||| || || || |||||| | | || Sbjct 33801 GAGC-GTGCACGTGATCTGTTCTACGCCCTCTGGACGCCCGACCTGTTCATGCGGCGCGT 33859 Query 104746 TGAG-GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804 ||| | || || | ||||| || ||||| || || || || || || | || | Sbjct 33860 GGAGAGCGA-CGGGGACTGGTCCCTTTTTTGCCCCAACGAGTGCCCGGGCCTGGCGGACG 33918 Query 104805 CCGTG-GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACT 104863 ||| || ||||||||| | || ||| | | ||||| ||||| || ||| | Sbjct 33919 -TGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACGA-GAAGA--GT-GGGAAAGC 33973 Query 104864 GCG-ACGGT--------GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACC 104914 || | ||| ||||| || | ||| || ||||| | || || Sbjct 33974 ACGCAAGGTTATTAAGGCCCAGCAGC-----TCTGGTTCGCGATTCTGGACTCCCAGGTG 34028 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 ||||| || || || |||||||| | ||| |||||||| |||| || || || || Sbjct 34029 GAGACAGGCACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAATCAAACCAGCAG 34088 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATC 105016 || ||||| ||||| |||||||| || || || ||| Sbjct 34089 AACTTGGGCACCATCAAATCATCCAATCTGTGCACGGAGATC 34130 >seq441 Length=67861 Score = 125 bits (138), Expect = 8e-24 Identities = 255/375 (68%), Gaps = 18/375 (5%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 |||||| ||||| || || || || | || | || | || || | ||||| || || Sbjct 41009 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 40950 Query 9583 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 ||||||||| | || || | | || || || |||||||| |||| || ||||| Sbjct 40949 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 40890 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCT--GGCATACCACCAGCACTGCGTTGCTTTCCC 9700 | || || ||||| || || ||| || |||| | || || | ||| || ||| Sbjct 40889 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAA--GCCCGCCCCGCGCTGACGGCCC 40832 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGACTTC 9756 |||||||||||||| || || || | |||||||| ||| | ||||| | ||| Sbjct 40831 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 40776 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG---C 9813 || | ||| || |||||| ||| ||||| || ||||||||||| ||||| | | | Sbjct 40775 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 40716 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 ||||| | ||||||||| || || || ||||| | |||| || || || || Sbjct 40715 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 40659 Query 9874 CTTACCCGTACCTGG 9888 ||||||||| || || Sbjct 40658 CTTACCCGTCCCGGG 40644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583210785386400