Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2348 165 2e-35 seq259 132 1e-25 >seq2348 Length=90098 Score = 165 bits (182), Expect = 2e-35 Identities = 219/303 (72%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 349585 ATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGC 349644 || |||| |||||||||||| | |||||||||||||| || || ||||||||||| | Sbjct 7693 ATTTTTAAATGAAACAGTAACAAAAGCTGTTATTACTGTCCCGGCATATTTTAATGACTC 7634 Query 349645 CCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGAT 349704 || | ||||||||||| || || | ||||| || ||| | || ||| | || || Sbjct 7633 TCAAAGACAAGCAACAAAAGACGCAGGTAAAATTGCAGGATTAGAAGTACTACGTATTAT 7574 Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764 |||||||| || || ||||| |||| |||||| | || |||| | ||| | | Sbjct 7573 AAATGAACCAACAGCCGCAGCTCTTGCTTATGGGTTAGACAAAA-----AATCAA-ATGA 7520 Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 || ||| | ||||||||||||||||||||||| ||||| || || | || | ||| Sbjct 7519 AACAATTTTAATTTTTGATTTAGGTGGTGGTACATTTGACGTTTCTATTTTAGAAGTTGG 7460 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 || || | |||||||| |||||| || || |||| || | ||||| || ||||| Sbjct 7459 GGATGGTGTATTTGAAGTATTAGCAACGGCAGGAGATAGCCACTTAGGTGGTGATGATTT 7400 Query 349885 TGA 349887 ||| Sbjct 7399 TGA 7397 Score = 96.9 bits (106), Expect = 1e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 |||||||| ||||||||||| || |||| || || || ||| |||||||||| || Sbjct 7397 TCAAAATCATCACCACCTAAGTGGCTATCTCCTGCCGTTGCTAATACTTCAAATACACCA 7456 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 || ||| | |||||| || || ||||||||||||||||| ||||||||| Sbjct 7457 TCCCCAACTTCTAAAATAGAAACGTCAAATGTACCACCACCTAAATCAAAA 7507 >seq259 Length=12200 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| |||| || || | ||| || ||||||||||| ||||| || || ||||| Sbjct 5803 ACCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGA 5744 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || ||||| || || || || || || ||||| || || || ||||||||||| || Sbjct 5743 CAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGG 5684 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || |||||||| || || ||||| || |||| ||| || || || Sbjct 5683 GATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCAC 5624 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || ||||| || ||||| Sbjct 5623 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 5576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515121218608580