Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2149 288 1e-72 seq1319 260 2e-64 seq3418 138 1e-27 seq4979 82.4 8e-11 >seq2149 Length=43014 Score = 288 bits (318), Expect = 1e-72 Identities = 488/691 (71%), Gaps = 16/691 (2%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || ||||| || ||||| || || ||||| || || || | || || | || | Sbjct 33426 TTCACGCATGCTACGCCTACACTTTTCAATGCCGGCACACCGCGGCCCCAACTCTCCTCC 33485 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 |||||||| || | |||||||| ||||| ||||||||||||||||| || |||||| | Sbjct 33486 TGCTTCCTCCTGACCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAGCAA 33545 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG--TATCCACTGCTCGAACGTCCGTG 53450 || || ||| ||||| | ||||||| || || |||||| | | | ||| | || | Sbjct 33546 TGCGCTGCCATTTCCAAATTTGCGGGTGGGATTGGCGTATCCA-TCCAC-AACATTCGGG 33603 Query 53451 CGAACGGCACACCAATCAA--GGGGA-CGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 || || || || | || | ||| |||||||| | || | || ||||| ||||||| Sbjct 33604 CG--CGAGACTCCTA-CATTCGTGGATCGAACGGCACCTCCAACGGCATCGTACCTATGC 33660 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 ||||||| |||||| | |||||||| |||||| ||||||| || || ||||||||||| | Sbjct 33661 TCCGCGTTTTCAACGATACGGCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGGTT 33720 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | |||||||||||||| ||||| ||||| || ||||| | || || || || |||||| Sbjct 33721 CCTTCGCCATCTACCTAGAGCCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCGTA 33780 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCC 53685 ||| || || |||| | ||| ||| ||||| ||||| ||| || || |||| || Sbjct 33781 AGAACCACGGCAACGAGTTGGAGCG-TGCACGTGATCTGTTCTAC-GCCCTCTGGACGCC 33838 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGA 53745 ||||| ||||||| ||||||| |||| ||| |||| ||| | ||||| ||||| Sbjct 33839 CGACCTGTTCATGCGGCGCGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGA 33898 Query 53746 GTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGC 53805 |||||| ||||| || || | ||| |||||||||||| || | || | |||| Sbjct 33899 GTGCCCGGGCCTGGCGGACGTGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACG- 33957 Query 53806 AGTTCAGGGCCGCTACAAG-AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCA 53864 || || | || | ||| | ||||| | || | ||| || || || Sbjct 33958 AGAAGAGTGGGAAAGCACGCAAGGTTATTAAGGCCCAGCAGCTCTGGTTCGCGATTCTGG 34017 Query 53865 AGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGA 53924 | |||||||||||| || ||||| |||||| | |||||| | |||| ||| Sbjct 34018 ACTCCCAGGTGGAGACAGGCACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAAT 34077 Query 53925 GCAACCAGAAGAACATCGGCGTCATCAAATC 53955 |||||| ||||| | ||| ||||||||| Sbjct 34078 CAAACCAGCAGAACTTGGGCACCATCAAATC 34108 Score = 203 bits (224), Expect = 4e-47 Identities = 556/835 (67%), Gaps = 40/835 (5%) Strand=Plus/Plus Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCC-GACT--GAAGCG 55183 || ||||| || ||||||||||| |||||||||| || |||||||| | | ||||| Sbjct 34269 GTGGTGACACGAAACCTGAACCGCGTCATCGACATCAACTACTACCCTGTCGAGGAAGCC 34328 Query 55184 GCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGAC 55243 |||| || ||| | || ||||| ||||||| ||||| || ||||| ||||| ||| Sbjct 34329 AGGCGC---TCGAACATGCGACACCGCCCCATCGGGATCGGCGTGCAGGGTTTGGCGGAC 34385 Query 55244 ATCTTCATGATGCTCGGATTGCCCTTCGA--CTCGGAACCTGCTCGAGAAATTAACCAGG 55301 |||||| | | | |||| || ||||| ||| | | || | | ||||| ||| Sbjct 34386 GCCTTCATCAAGATGCGATTCCCATTCGAGTCTCCGGAG--GCCCAGCAGCTTAACAAGG 34443 Query 55302 ACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGC 55360 |||| ||| || | ||| ||||| | ||| | |||| |||| | | || |||| Sbjct 34444 ACATTTTCGAGAC-CATGTACTTCGGGGCGGTAGAGGCGTCGATGGAGATCGCGATGAAG 34502 Query 55361 GAGGGGACCTACGAGACGTTC-CGTGATTCGCCAGCTGA-CAAGGGACTTCTCCAGTTCG 55418 ||||| |||||||||| ||| | | | | ||| ||| |||||| | |||| |||| Sbjct 34503 GAGGGTCCCTACGAGACCTTCGCCGGCTCCCCCA--TGAGCAAGGGCGTCTTCCAATTCG 34560 Query 55419 ATCTATGGGGCAAGTCTGACCCCATGT------------TTGACAAGTTGAAGCATGACA 55466 | | |||||| ||||||| | | | | ||| | || | | | Sbjct 34561 ACATGTGGGGCG----TGACCCCCTCAACTCGCTGGGACTGGGCCGGTTTACGCTTCAAA 34616 Query 55467 TT-CACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACG 55525 | || | || | |||||||| || | | || || ||||| ||||| || || Sbjct 34617 GTGCAGGAGCACGGTGTCCGCAACTCACTATTGCTCGCACCCATGCCTACCGCATCTACT 34676 Query 55526 GCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGC 55585 || |||||| |||||||||||||| | | ||||| | ||| | ||||| ||| || Sbjct 34677 GCGCAGATCCTGGGCAACAACGAGTCTGTTGAGCCTTTCACATCGAACATGTACTCCCGT 34736 Query 55586 CGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAG 55645 || | || || || || || | |||||| |||| || ||||| || | Sbjct 34737 CGCGTGTTGGCGGGCGAATTCACGGTGGTGAACAAGTACCTGCTCCGCGACCT-CATC-G 34794 Query 55646 ATCAA--CAAGTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCC 55703 | ||| | ||||| | | || | | ||| || | ||| |||| || |||| Sbjct 34795 ACCAAGGCCTGTGGACTTCTGAAGTCCGAAATCAAATTATGGGCAACAGGGGCTCAGTCC 34854 Query 55704 AGAATCTGG--AG-ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTC 55760 ||||| ||| || || |||| | |||||||| | ||| ||| ||||||||||| | Sbjct 34855 AGAATGTGGCCAGCATCCCTCGGGAGCTCAAGGACCTGTACAAGACAGTGTGGGAGATCC 34914 Query 55761 CACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGT 55820 |||||| | |||| ||| | || || || || || |||||| ||||| |||| Sbjct 34915 GGCAGAAGTGCGTGATCGACCAGGCCGCCGACCGCGGCGCCTACATCTGTCAGTCGCAGT 34974 Query 55821 CTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACG 55880 |||| || ||| ||| ||||| | | || || | | ||| |||||||| || Sbjct 34975 CTCTCAATATCCATTTGGCCAATCCGACGCCTGCACAGCTCACCTCCATGCACTTCTATT 35034 Query 55881 GGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGC 55935 ||||||||||| |||||||| || |||||||| || |||||||| ||||||| Sbjct 35035 CCTGGAAGAAGGGGCTCAAGACCGGCATGTACTACCTACGGACCCGGCCCAAGGC 35089 >seq1319 Length=24917 Score = 260 bits (288), Expect = 2e-64 Identities = 527/766 (69%), Gaps = 12/766 (2%) Strand=Plus/Minus Query 53196 TGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||||| ||| | |||||||| || || || || | ||| | | ||||| ||||| Sbjct 9842 TGCGCGTGGCCCTTGGTATCCATGGAGAGGATCTGCCCGCC-GCCTTGGAGACCTACGAG 9784 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | |||||| | |||| || | |||||| | || || || ||| |||| || ||| | Sbjct 9783 CTCATGAGCAACAAGTGGTTCATCCACGCCTCCCCTACTCTTTTCCACGCGGGCACGCGT 9724 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 ||| |||||||| |||||||| |||| ||| | | |||||||||| || ||| Sbjct 9723 TTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCATGCAAGCGGACTCGATCGTTGGTATC 9664 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC-CA 53433 ||||| ||||| ||| |||| ||| || |||| | |||| || ||||| || | Sbjct 9663 TACGACACGCTGAAGCAGTGCGCCGTGATAAGCAAGGCGGCGGGGGGAATCGGCCTCTCG 9604 Query 53434 CTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC-CGATG 53492 | | | ||| |||| ||| ||||| | || ||||| ||||| || | || | | | Sbjct 9603 GTCCAC-AACATCCGCGCGCACGGCGCCTACATTAAGGGCACGAAGGG-GACGAGCAACG 9546 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | | ||||| |||||| | |||||| || |||||| || ||||| ||||||| || | Sbjct 9545 GTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCAGGGGGGAG 9486 Query 53553 GGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 | ||| | | ||||| | || ||||||||||| |||||||||||||| ||||| | || Sbjct 9485 GCAAGAGGCCAGGGGCCTTT-GCCATCTACCTGGAGCCGTGGCACGCGGACATCTTTGAA 9427 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 | || || ||||| ||| || || | || ||| ||| ||| || || || Sbjct 9426 GTGCTGGACCTGCGGAAGAACCACGGAAAGGAGGAGGCGCGGGCCCGGGATCTCTTCTAT 9367 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGA-GTGGTACCT 53730 | || |||||||| ||||| |||||| | | ||||||| |||| |||| |||| ||| Sbjct 9366 GGACTATGGATTCCCGACCTGTTCATGGAGAGGGTGGAGGAGGA-TAGGACCTGGTCCCT 9308 Query 53731 GATGTG-CCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 ||||| ||||| | |||||||||| ||| || | |||| ||| || || Sbjct 9307 CATGTGTCCCGATC-AGTGCCCCGGTCTCGCGGACTGCCACGGCCAGGCCTTCCGGGACC 9249 Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 | ||| | |||| | ||||||| |||||||| || || | || | | Sbjct 9248 TATATTTAAAATACGAACGAGAGGGCCGAGTCAAGAAGACAGTGCGTGCTCAGGACTTGT 9189 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || ||| ||| | | ||| | |||||||| ||||| |||||| |||||||| Sbjct 9188 GGTTTGCCATCTTGGACTCGCAGATTGAGACGGGCACGCCCTACATGCTGTACAAGGACG 9129 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955 | |||| |||||||||||| ||||| | ||| |||||| || Sbjct 9128 CTTGCAACCTGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTC 9083 >seq3418 Length=26553 Score = 138 bits (152), Expect = 1e-27 Identities = 213/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 || ||||||||||| |||||| | ||||||||| ||||| || || | |||||| || Sbjct 16535 CAGACGCGTGAAGACGTATCGAGGGCTGGCCGCGTCCTTCCCCCCCATGATCCGCGTGCC 16476 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 ||||| || || | ||||| | |||||||| |||||||||||| || |||| Sbjct 16475 GAACTGCCCGCTCGGGTAGAGGAAACCAATGTTGTTGGAGCCCACGAAATTTTGGGCCAT 16416 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 ||| ||||| || | || || || ||||| || || |||| ||||| | || Sbjct 16415 TCCCACGATCGTCCCGTTCAAGGAGGCCTCGCCGTGATGGTAGGCCGAGTGCTCGGAGAC 16356 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 ||| || |||| ||| || ||||| || || || | |||||| || | ||||| | Sbjct 16355 GTAGCCAGCCAGCTGGGCGACCTTAATCTCTTTCTTGAGGTTCCGTTTAAAGCAGGCAAA 16296 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGAT 152321 | || || ||||||| || |||| || |||| || ||| || || || |||| | | Sbjct 16295 GAGAACTTTCCGCTGGGCCGGCTTCAGCCCATCCATCAGGTGGGGGATGGAGCGCTGGTT 16236 Query 152322 GTCC 152325 |||| Sbjct 16235 GTCC 16232 >seq4979 Length=17524 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 75111 TCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAA 75170 || ||||| ||||||| | | | |||||| | || |||||||||||||||||||| || Sbjct 10416 TCGTTTGAGAAATTCAAGGCCAAATTCTCGTTCACAATGCCGTCCGAGGCGGCGAAGAAG 10475 Query 75171 GCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGG 75230 || || || | || |||||| || || | ||| || | || ||||| ||| || | Sbjct 10476 GCGAGGACGTGTGAGACAAAGTGACGTTCGTTGTCCGTTAACTTTTCCCAGTCCGTCTTG 10535 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 || || | || | ||| ||| |||||||||| Sbjct 10536 TCGTGGGCGAGGTCGAGCTCTTCGGCCGTCCAGAA 10570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547169076228000