Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5823 178 1e-39 >seq5823 Length=45548 Score = 178 bits (196), Expect = 1e-39 Identities = 325/476 (68%), Gaps = 0/476 (0%) Strand=Plus/Plus Query 29873 TTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCT 29932 ||||||| || || | || |||||| || || || || || | |||| | |||||| Sbjct 5640 TTCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCT 5699 Query 29933 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29992 || | || | || ||| ||||| | || | || | ||| | ||| ||| || Sbjct 5700 CCGGCTTTCAAGCCACAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATA 5759 Query 29993 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 30052 || || || || || | ||||||||| | || | ||| || | |||||| ||||||||| Sbjct 5760 TTGAACGGCACACCCAACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCT 5819 Query 30053 CCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG 30112 ||||| ||||| || || || | ||| ||||| || || ||||| ||||| Sbjct 5820 CCGTCTGCGACGTAGAATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAA 5879 Query 30113 TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 30172 || |||||||||||| | || |||||||| | || |||||||||| | ||||| | Sbjct 5880 TCCGCGGGGTTCCAGGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTG 5939 Query 30173 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG 30232 | || || ||| || | || | || | |||||||| |||||||| Sbjct 5940 GTTATTGCCCGAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGTGTGCATGTCCGAA 5999 Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 ||||| || |||||||||| ||| ||||| ||||| || || |||| || ||||||||| Sbjct 6000 TACTCCGCCCCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCC 6059 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30348 | ||| | |||| ||||||| | | || | ||| ||| |||||||||| Sbjct 6060 CGGTGAGAAAGGCCCAATTTGTCCAGATATTCCCGGGAGGAGTTCCCGTCCCAGAT 6115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406276429911120