Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq2348 664 0.0 >seq2348 Length=90098 Score = 664 bits (736), Expect = 0.0 Identities = 744/992 (75%), Gaps = 12/992 (1%) Strand=Plus/Plus Query 176104 TGGGAGCAGTTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTT 176163 ||||||| || ||| ||| |||| | ||| | ||| | | ||| | |||||||| Sbjct 63515 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 63574 Query 176164 GGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATT 176223 ||||| | ||||| || | | || ||| || || || ||| | || || || Sbjct 63575 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 63634 Query 176224 GCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTAT 176283 |||||||| || || |||||||| ||||| || |||||||| || ||||| || | || Sbjct 63635 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 63694 Query 176284 GGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTC 176343 ||||||||||| ||| |||| || || | ||||| || ||||| || || | |||||| Sbjct 63695 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 63754 Query 176344 TACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAA 176403 |||||| | |||||||| || | || ||||||||||| ||||| || || || |||||| Sbjct 63755 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 63814 Query 176404 CTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCT---TACATGGGACGCCAATGGGAA 176460 || || ||||| |||||| | | ||| | |||| ||||||||||| |||||||| Sbjct 63815 CTTGTAGTATTACACTTCTTATTAGGTGT---AGCTTGCTACATGGGACGTGAATGGGAA 63871 Query 176461 CTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCT 176520 ||||| ||| | |||| |||||||||||||| | || || | ||| || |||||| || Sbjct 63872 CTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCT 63931 Query 176521 GCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATG 176580 ||||| | ||||| ||| | | || ||| |||| ||||| ||||||||||||||| Sbjct 63932 GCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATG 63991 Query 176581 CCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATT 176640 ||| | || || || ||||| |||||||| ||||| |||||||||||||| ||||||||| Sbjct 63992 CCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATT 64051 Query 176641 CTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCA 176700 || |||||||||||||||||| ||| || || |||||||||||||||||| | ||| Sbjct 64052 CTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGT 64111 Query 176701 GCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAAC---GAA 176757 |||||||| || |||||| || ||| | | | || ||| ||| || | | Sbjct 64112 GCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTA 64168 Query 176758 TCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCA 176817 || ||||||||||||||||| |||||||||||||| || |||||||| ||||||||| Sbjct 64169 TCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCA 64228 Query 176818 CACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTT 176877 |||||||||||||| ||| | |||||||| || || |||||| |||||| | | | Sbjct 64229 CACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTA 64288 Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937 ||||||||| | || || | |||||||| | |||||||| ||||| | || || || Sbjct 64289 CACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGC 64348 Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGT 176997 ||||||||||||||| | ||||| |||||||||||||| || || | || | | ||| Sbjct 64349 ACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGT 64408 Query 176998 AAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATG 177057 ||||| || |||| || || | |||||||| | | ||||||||||| ||| Sbjct 64409 CGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 64468 Query 177058 CACGAGCGTAATGCTCACAACTTCCCACTTGA 177089 ||||| ||||| || ||||||||||| || || Sbjct 64469 CACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603442650355200