Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq5823 91.5 2e-13 >seq5823 Length=45548 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 78496 GTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACGC 78555 |||| ||| ||||| ||||| ||||||||||||| || || | || | |||||| Sbjct 5736 GTCAAGAGTGCGTAAGAGGCAATATTGAACGGCACACCCAACCCCATGTCTGCGGAACGC 5795 Query 78556 TGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACA-GTGACA 78614 |||||| ||| ||| || | |||| ||| ||| ||| | ||||| |||||| Sbjct 5796 TGATACATCTGACAAGAGAGCTCTCCGTCTGCGACGTAGAATTGGCA-AAACATGTGACA 5854 Query 78615 CGGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGATGATCCCGCG 78674 ||| ||| ||||| || ||| ||| | |||||||| || || || ||||| | ||| Sbjct 5855 CGGCGGCAGGGCCATCTTTCCCAAATCCGCGGGGTTCCAGGCCGATACAATGATGCGGCG 5914 Query 78675 ATCGTCTGG 78683 ||| ||||| Sbjct 5915 ATCCTCTGG 5923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568424853388800