Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04-
08] 6,860 sequences; 25,618,953 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq5823 159 3e-34
>seq5823
Length=45548
Score = 159 bits (176), Expect = 3e-34
Identities = 319/466 (68%), Gaps = 10/466 (2%)
Strand=Plus/Plus
Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613
|| |||||||| | ||| |||||||| | ||| || | | ||| || | ||| ||
Sbjct 5655 TGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCTCCGGCTTTCAAGCCA 5714
Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673
||| ||||| | || | || | || |||||| ||||| ||||||||||| ||
Sbjct 5715 CAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATATTGAACGGCACACCC 5774
Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733
|||||||||||| | || || ||||| | ||| || || ||||| || | |||||||||
Sbjct 5775 AACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTCCGTCTGCGACGTAG 5834
Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793
|||||||| | |||| ||||| || || |||||| | |||| ||||||||
Sbjct 5835 AATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAATCCGCGGGGTTCCAG 5894
Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT--CACGTACT 6851
|| | | | ||| | | || || ||||| ||| | |||| || | || |
Sbjct 5895 GCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTGGTTATTGCCCGAGC- 5953
Query 6852 GCAGCTGGTCCGCTCCCTGT-CCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCA 6910
|| ||||| || | ||| | || | ||||| | | | || ||||||||||||
Sbjct 5954 -CAACTGGT-CGATGCCTTTGCCAGTGTAGTCTGTGTGCATGTCCGAATACTCCGCCCCG 6011
Query 6911 AAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA- 6969
|| || | ||| ||||| |||||||| |||||||| || ||||| |||| | || |||
Sbjct 6012 AAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCCC--GGTGAGAAA 6069
Query 6970 -CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014
||| ||||||||| | || || || || ||||||||||
Sbjct 6070 GGCCCAATTTGTCCAGATATTCCCGGGAGGAGTTCCCGTCCCAGAT 6115
Score = 159 bits (176), Expect = 3e-34
Identities = 319/466 (68%), Gaps = 10/466 (2%)
Strand=Plus/Minus
Query 34331 ATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCCCATCTCGGG 34388
|||||||||| || || || || | ||||||||| ||| ||| || | |||
Sbjct 6115 ATCTGGGACGGGAACTCCTCCCGGGAATATCTGGACAAATTGGGCCTTTCTCACC--GGG 6058
Query 34389 AGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATC 34448
| ||||| || |||||||| |||||||| ||||| ||| | || || ||||||||||||
Sbjct 6057 AAGAGGGGGATTTGGGCCCCGTCTACGGCTTCCAATGGCGGCATTTCGGGGCGGAGTATT 5998
Query 34449 GGGGGAGCGAAGCGGACTATTCGGG-ACAGGGAGCGGACCAGCTGCAGTACGTG--ATCG 34505
|| | | | ||||| | || | ||| | || ||||| || | || | ||
Sbjct 5997 CGGACATGCACACAGACTACACTGGCAAAGGCATCG-ACCAGTTG--GCTCGGGCAATAA 5941
Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565
|||| | ||| ||||| || || | | ||| | | | || |||||||| ||
Sbjct 5940 CCACCATCAAGGACAACCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGG 5881
Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATG 34625
|| | |||||| || || ||||| |||| | ||||||||||||||||| | |
Sbjct 5880 ATTTGGGAAAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTCGCAGACG 5821
Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685
| ||||| || || ||| | ||||| || || | |||||||||||| || ||||||||||
Sbjct 5820 GAGAGCTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCA 5761
Query 34686 ACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745
| ||||| |||||| || | || | || | ||||| ||| || ||| | |
Sbjct 5760 ATATTGCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAAGTCTGTGGCTTGAAAGCCG 5701
Query 34746 GGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCA 34791
| ||| | | || ||| | |||||||| ||| | |||||||| ||
Sbjct 5700 GAGAGTTCATTCACACGATTGGGGATGCACATGTGTACCTGAATCA 5655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448223961499200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |