Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5823 159 3e-34 >seq5823 Length=45548 Score = 159 bits (176), Expect = 3e-34 Identities = 319/466 (68%), Gaps = 10/466 (2%) Strand=Plus/Plus Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || |||||||| | ||| |||||||| | ||| || | | ||| || | ||| || Sbjct 5655 TGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCTCCGGCTTTCAAGCCA 5714 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||| ||||| | || | || | || |||||| ||||| ||||||||||| || Sbjct 5715 CAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATATTGAACGGCACACCC 5774 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 |||||||||||| | || || ||||| | ||| || || ||||| || | ||||||||| Sbjct 5775 AACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTCCGTCTGCGACGTAG 5834 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 |||||||| | |||| ||||| || || |||||| | |||| |||||||| Sbjct 5835 AATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAATCCGCGGGGTTCCAG 5894 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT--CACGTACT 6851 || | | | ||| | | || || ||||| ||| | |||| || | || | Sbjct 5895 GCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTGGTTATTGCCCGAGC- 5953 Query 6852 GCAGCTGGTCCGCTCCCTGT-CCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCA 6910 || ||||| || | ||| | || | ||||| | | | || |||||||||||| Sbjct 5954 -CAACTGGT-CGATGCCTTTGCCAGTGTAGTCTGTGTGCATGTCCGAATACTCCGCCCCG 6011 Query 6911 AAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA- 6969 || || | ||| ||||| |||||||| |||||||| || ||||| |||| | || ||| Sbjct 6012 AAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCCC--GGTGAGAAA 6069 Query 6970 -CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014 ||| ||||||||| | || || || || |||||||||| Sbjct 6070 GGCCCAATTTGTCCAGATATTCCCGGGAGGAGTTCCCGTCCCAGAT 6115 Score = 159 bits (176), Expect = 3e-34 Identities = 319/466 (68%), Gaps = 10/466 (2%) Strand=Plus/Minus Query 34331 ATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCCCATCTCGGG 34388 |||||||||| || || || || | ||||||||| ||| ||| || | ||| Sbjct 6115 ATCTGGGACGGGAACTCCTCCCGGGAATATCTGGACAAATTGGGCCTTTCTCACC--GGG 6058 Query 34389 AGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATC 34448 | ||||| || |||||||| |||||||| ||||| ||| | || || |||||||||||| Sbjct 6057 AAGAGGGGGATTTGGGCCCCGTCTACGGCTTCCAATGGCGGCATTTCGGGGCGGAGTATT 5998 Query 34449 GGGGGAGCGAAGCGGACTATTCGGG-ACAGGGAGCGGACCAGCTGCAGTACGTG--ATCG 34505 || | | | ||||| | || | ||| | || ||||| || | || | || Sbjct 5997 CGGACATGCACACAGACTACACTGGCAAAGGCATCG-ACCAGTTG--GCTCGGGCAATAA 5941 Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 |||| | ||| ||||| || || | | ||| | | | || |||||||| || Sbjct 5940 CCACCATCAAGGACAACCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGG 5881 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATG 34625 || | |||||| || || ||||| |||| | ||||||||||||||||| | | Sbjct 5880 ATTTGGGAAAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTCGCAGACG 5821 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 | ||||| || || ||| | ||||| || || | |||||||||||| || |||||||||| Sbjct 5820 GAGAGCTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCA 5761 Query 34686 ACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745 | ||||| |||||| || | || | || | ||||| ||| || ||| | | Sbjct 5760 ATATTGCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAAGTCTGTGGCTTGAAAGCCG 5701 Query 34746 GGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCA 34791 | ||| | | || ||| | |||||||| ||| | |||||||| || Sbjct 5700 GAGAGTTCATTCACACGATTGGGGATGCACATGTGTACCTGAATCA 5655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448223961499200