Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq5823 111 1e-19 >seq5823 Length=45548 Score = 111 bits (122), Expect = 1e-19 Identities = 173/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 118453 GTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTA 118512 ||||| || |||||| | || | ||||||| || ||||| ||||||||||| || Sbjct 5628 GTGAGCTGCTCTTTCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTG 5687 Query 118513 TGTATGAATTCACCAGGTGT-AAGCC-CTGTCAGGTGAGCAATCATGTATGTCAACAAAC 118570 || ||||| || || | | | ||||| | | | ||||| | || | |||||| | Sbjct 5688 TGAATGAACTCTCCGGCTTTCAAGCCACAGACT--TGAGCTACCAAGCGTGTCAAGAGTG 5745 Query 118571 TGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATT 118630 ||| ||| | ||| || || ||||||| ||||||||||| || | ||| |||| | Sbjct 5746 CGTAAGAGGCAATATTGAACGGCACACCCAACCCCATGTCTGCGGAACGCTGATACATCT 5805 Query 118631 GGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAA 118690 | ||||||||||| |||| ||| || || || || | | |||||||| || ||||| Sbjct 5806 GACAAGAGAGCTCTCCGTCTGCGACGTAGAATTGGCAAAACATGTGACACGGCGGCAGGG 5865 Query 118691 CCAT 118694 |||| Sbjct 5866 CCAT 5869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414442147149040