Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq802 145 2e-29 seq259 134 3e-26 seq6464 122 2e-22 >seq802 Length=4370 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| | || |||||||| || ||||| || || | || || | ||| ||||| Sbjct 277 GACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTCTTC 336 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||| |||||||| || ||||| || || || || |||| || |||||||| || Sbjct 337 CAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTG 396 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||||| ||||| ||||||||||| || | || || || | ||||| ||||| Sbjct 397 AATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGTCTT 456 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || | |||||| Sbjct 457 GCCCGTCAGGGTCTTGACGAAGATCTGCAT 486 >seq259 Length=12200 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || || |||||||| || ||||| || || | | || | || || Sbjct 5787 AGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCGTCC 5728 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || || || ||||| || || ||||| || | || ||||||||| Sbjct 5727 TCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCC 5668 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || ||||| |||||| | || || ||||| ||||| ||| Sbjct 5667 TGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATGGTC 5608 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | ||||| Sbjct 5607 TTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 5576 >seq6464 Length=44462 Score = 122 bits (134), Expect = 2e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 || ||||| ||||| || ||||||||||| || || || ||||| || || ||||| || Sbjct 38421 AGTGTCCTCCCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGG 38480 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | || |||||||||||||||||||| ||||| || || |||||||| | || || Sbjct 38481 ATCCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACG 38540 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||| || ||||| ||||| || ||||| || || | ||||| Sbjct 38541 TCCAAAGTAATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 38587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159050117783900