Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq259 131 1e-25 seq6464 91.5 1e-13 >seq259 Length=12200 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||||||||| || |||||| || || || || || | | || || |||| || Sbjct 5784 ACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCGTCCTCC 5725 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || |||||||| || || |||||||| || | ||| | | ||| |||||| Sbjct 5724 AGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGA 5665 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||||| || | || | | ||| || || | ||||||||| | |||||| | || Sbjct 5664 ATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATGGTCTTG 5605 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||||||||| |||||||||||||||||| Sbjct 5604 CCCGTCAGCGTCTTAACAAAGATTTGCATC 5575 >seq6464 Length=44462 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| ||||| || || |||||||| || | ||| | | ||| ||| Sbjct 38433 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 38492 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || || | || | | || ||||| | ||||||||||| || || Sbjct 38493 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 38552 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||||||| || ||||| || |||||||| Sbjct 38553 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 38587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429509687303180