Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4376 176 1e-38 seq259 140 8e-28 seq802 136 9e-27 seq6464 125 2e-23 seq4375 105 2e-17 seq2348 104 6e-17 seq4379 96.9 8e-15 seq4378 87.8 4e-12 >seq4376 Length=302 Score = 176 bits (194), Expect = 1e-38 Identities = 209/282 (74%), Gaps = 1/282 (0%) Strand=Plus/Minus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGG 7506 |||||||| ||||| || | |||| ||| || || | || ||| | | || | Sbjct 288 TATTTAATTTTTGGGGGTGTAGCTGGAATTGCGGGAACAACTTTATCTGTTTTAATTCGA 229 Query 7507 TTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTT 7566 || ||| ||||| || || ||| | || |||||||| ||| | ||||| ||| Sbjct 228 TTGGAACTAGCTCAACCCGGAAATCAGTTTTTATCTGGTAATAATCAATTATACAATGTT 169 Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 ||| | || | ||||| ||| ||||||| || ||||| || ||||| ||| |||| || Sbjct 168 ATTGTAACAGGACATGCGTTTATTATGATATTTTTTTTCGTAATGCCCGTTCTGATTGGT 109 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 ||||| |||||||| || || |||||||||||||||||||||||||||||||| || | Sbjct 108 GGTTTTGGAAATTGGTTTGTGCCTTTAATGATTGGTGCTCCTGATATGGCTTTCCCTCGA 49 Query 7687 CTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTATT 7727 | || ||||| |||||||| ||| | |||||||| |||||| Sbjct 48 ATGAATAATATTAGTTTTTGGTTATTGCCGCCTTCTCTTATT 7 >seq259 Length=12200 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | || |||||| | || || || || ||||| || | ||||| || | ||| || Sbjct 5797 ACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGT 5738 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||| || || ||||||||||| || || || || || || || || || || ||||| Sbjct 5737 GCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACC 5678 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||||||||| ||||| ||||| || |||||||| | Sbjct 5677 CTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAG 5618 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||||||||||| || || | || | |||||| Sbjct 5617 CGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 5576 >seq802 Length=4370 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || ||| | ||| | || || ||||| || | ||||| || | || || | || || Sbjct 274 CAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTC 333 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || ||||| || || || || || ||||| ||||| || |||||||| Sbjct 334 TTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTC 393 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| ||||||||||||||| ||||||||| || || || || || || ||||| || Sbjct 394 TTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGT 453 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 454 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 486 >seq6464 Length=44462 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 || |||||||| || |||||||| || || || || || || || || || || || || Sbjct 38424 GTCCTCCCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATC 38483 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 || |||||||| |||||||||||||||||| || |||||||| || |||||||| Sbjct 38484 CCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCC 38543 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||||||||||| || || | ||| | |||||| Sbjct 38544 AAAGTAATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 38587 >seq4375 Length=12082 Score = 105 bits (116), Expect = 2e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || |||||||| || |||||||| || ||||| || || |||||||| ||||||||||| Sbjct 8790 AAAATTTGACCGTCTGTAATAGAAATTACATTGGTTGGAATATAAGCGGAAACATCACCA 8849 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | |||||| | ||||||| |||||||| || || |||||| Sbjct 8850 GCTTGAGTTTCAATAACAGGAAGAGCTGTTAAAGATCCACCTCCTAATGATTTATT 8905 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||||||||||||||| || ||||| || ||||| | | |||||| || || | Sbjct 11594 ATACTTCAGGATGACCAAAAAACCAAAATAAGTGCTGATACAACACAGGATCACCACCAC 11653 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | ||| || |||| |||||||||| |||||||||||||| Sbjct 11654 CAGCTGGGTCGTAAAAAGTAGTATTAAAGTTTCTATCAGTTAA 11696 >seq2348 Length=90098 Score = 104 bits (114), Expect = 6e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 44010 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATCCTCCACCGCTTGTGCGGGCCC 43951 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || |||| Sbjct 43950 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTCCCCAGGCGGGATACTTAACGC 43891 Query 7855 GTTAGCT 7861 ||||||| Sbjct 43890 GTTAGCT 43884 Score = 86.0 bits (94), Expect = 1e-11 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 372644 AGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTG 372703 ||||||||||||| ||||||||||| ||||||||||| |||| ||||||||| ||| ||| Sbjct 46620 AGCGACTGTTTACCAAAAACACAGGTCTCCGCTAAGTCGTAAGACGATGTATGGGGGCTG 46679 Query 372704 AC 372705 || Sbjct 46680 AC 46681 >seq4379 Length=14604 Score = 96.9 bits (106), Expect = 8e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||||||| | |||||||||||||||| |||||||||||| ||| ||||| | |||| | | Sbjct 7093 ACAGAATTGGGGGTAGCGACTGTTTAGTAAAAACACAGGTCTCTGCTAATTCGTAAGAAG 7034 Query 372690 ATGTATAGGGTCTGACAC 372707 |||||||||| ||||||| Sbjct 7033 ATGTATAGGGACTGACAC 7016 >seq4378 Length=5432 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 7723 TTATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCG 7782 |||| || || ||||||| || |||| |||| |||||||||||| ||||||| Sbjct 1567 TTATGTCAAGAACTGGTAAGGTTTCGCGCGTATTATCGCATTAAACCACATGCTCCACCA 1626 Query 7783 CTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTG 7842 ||| || | | |||||| || ||||||||| ||||||||| ||||| | | |||| | Sbjct 1627 CTTGTATAGGCCCCCGTCAATTCCTTTGAGTTCCAACCTTGCGATCGTACTCCCCAGGCG 1686 Query 7843 GAATATTT-ACGCGTTAGCT 7861 || | ||| ||| |||| || Sbjct 1687 GAGTGTTTAACGTGTTAACT 1706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192426383960840