Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5823 132 4e-26 >seq5823 Length=45548 Score = 132 bits (146), Expect = 4e-26 Identities = 312/478 (65%), Gaps = 6/478 (1%) Strand=Plus/Plus Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 |||||| || || || | ||||| || || ||||| || | ||||| | ||||||| Sbjct 5641 TCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCTC 5700 Query 29706 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29765 | | || | || ||| ||||| | || | || | ||| | ||| ||| || | Sbjct 5701 CGGCTTTCAAGCCACAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATAT 5760 Query 29766 TAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTC 29825 | || ||||| || | ||||||||| | || | ||| || | ||| || |||||||||| Sbjct 5761 TGAACGGCACACCCAACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTC 5820 Query 29826 CGTCGCTCACGTAAAACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCA 29882 |||| ||||| || || | ||||| || ||||| || |||||||| |||| Sbjct 5821 CGTCTGCGACGTAGAATTGGCAAAACATG---TGACACGGCGGCAGGGCCATCTTTCCCA 5877 Query 29883 AGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGA 29942 | || |||||||||||| | || |||||||| | || |||||||||| | ||||| Sbjct 5878 AATCCGCGGGGTTCCAGGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGG 5937 Query 29943 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNN 30002 | | || || ||| || | || | || | |||||||| Sbjct 5938 TGGTTATTGCCCGAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGTGTGCATGTCCG 5997 Query 30003 NNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30062 ||||||||| ||| ||||| ||||| || || |||| || ||||||| Sbjct 5998 AATACTCCGCCCCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTT 6057 Query 30063 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30120 ||| ||| | |||| ||||||| | | || | ||| ||| |||||||||| Sbjct 6058 CCCGGTGAGAAAGGCCCAATTTGTCCAGATATTCCCGGGAGGAGTTCCCGTCCCAGAT 6115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406129242217960