Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04-
08] 6,860 sequences; 25,618,953 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq5823 183 2e-41
>seq5823
Length=45548
Score = 183 bits (202), Expect = 2e-41
Identities = 326/476 (68%), Gaps = 0/476 (0%)
Strand=Plus/Plus
Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 27198
||||||| || || |||| |||||| || || || || || | ||||| | ||||||
Sbjct 5640 TTCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCT 5699
Query 27199 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 27258
|| | || | || ||| ||||| | || | || | ||| | ||| ||| ||
Sbjct 5700 CCGGCTTTCAAGCCACAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATA 5759
Query 27259 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 27318
|| || || || || | ||||||||| | || | ||| || | |||||| |||||||||
Sbjct 5760 TTGAACGGCACACCCAACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCT 5819
Query 27319 CCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG 27378
|| || ||||| || || || | ||| ||||| || || ||||| |||||
Sbjct 5820 CCGTCTGCGACGTAGAATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAA 5879
Query 27379 TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 27438
|| |||||||||||| | || |||||||| | || |||||||||| | ||||| |
Sbjct 5880 TCCGCGGGGTTCCAGGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTG 5939
Query 27439 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTG 27498
| || || ||| || | || | || | ||||||| ||||||||
Sbjct 5940 GTTATTGCCCGAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGTGTGCATGTCCGAA 5999
Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558
||||| || |||||||||| ||||||||| ||||| || || |||| || |||||||||
Sbjct 6000 TACTCCGCCCCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCC 6059
Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 27614
| ||| | |||| ||||||| | | || | ||| ||| ||||||||||
Sbjct 6060 CGGTGAGAAAGGCCCAATTTGTCCAGATATTCCCGGGAGGAGTTCCCGTCCCAGAT 6115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369476306888660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |