Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2348 663 0.0 >seq2348 Length=90098 Score = 663 bits (734), Expect = 0.0 Identities = 742/989 (75%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 183187 TGGGAATCCTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTT 183246 ||||| ||||||| ||||| || ||||| | ||||| | || | |||||||| Sbjct 63515 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 63574 Query 183247 GGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTC 183306 || | ||||| || || | || |||| || | |||||||||| | || ||| || Sbjct 63575 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 63634 Query 183307 GCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTAT 183366 || || ||||| || || ||||| || ||||| ||||| || ||||| || || | || Sbjct 63635 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 63694 Query 183367 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTC 183426 ||||||||||| ||| | ||||| ||| |||| ||| ||||| ||||| |||||||| Sbjct 63695 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 63754 Query 183427 TATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAA 183486 || || | |||||||| || || | || || ||||| || |||||||||||||||||| Sbjct 63755 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 63814 Query 183487 CTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTG 183546 || ||||| || |||||| | | || || ||||||||||| ||||| |||||| | Sbjct 63815 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 63874 Query 183547 TCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCT 183606 |||||| | || |||||||||||||| | || |||| || || || ||||| Sbjct 63875 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 63934 Query 183607 GCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCC 183666 |||| || || ||| | | || || |||| |||||| || |||||||||||| Sbjct 63935 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 63994 Query 183667 CTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTG 183726 | |||||| ||| || || |||| ||| | || ||||||||||| |||||||| || Sbjct 63995 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 64054 Query 183727 ATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCA 183786 |||||||| ||||| ||| ||||| |||||||| || ||||| ||| | ||||||||| Sbjct 64055 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 64114 Query 183787 ATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTG-AGTCTGAGTCACA 183845 ||||| |||||||| || || || | | |||||| |||| || | | || | Sbjct 64115 ATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGTGTATCT 64171 Query 183846 G--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCAT 183903 | ||||| |||||||| || || ||||||||||| || |||||||| || ||||| || Sbjct 64172 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 64231 Query 183904 GGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCAC 183963 || |||||||| ||| | |||||||| || || || ||||| || ||| || | ||| Sbjct 64232 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 64291 Query 183964 TTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACT 184023 |||||| | |||||||||||||| || || |||||||| ||||||||||| ||||||| Sbjct 64292 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 64351 Query 184024 ATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 184083 |||||||| ||| | || || || ||||||||||| || | ||||| | ||||||||| Sbjct 64352 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 64411 Query 184084 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 184143 || | ||||| ||||| ||| || |||||||||||| | | || |||||||| |||||| Sbjct 64412 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 64471 Query 184144 GAGCGTAATGCTCACAACTTCCCTCTCGA 184172 || ||||| || |||||||||||||| || Sbjct 64472 GAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 585 bits (648), Expect = 3e-162 Identities = 736/1008 (73%), Gaps = 2/1008 (0%) Strand=Plus/Minus Query 185973 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 186032 ||||||||| | ||||| || || || || ||| | || ||||| || | | | ||| Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 186033 CCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGG 186092 || || || | | | ||| ||||||| ||| | || || || || |||||||| ||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 186093 TATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCAGT 186151 || || || || || || ||||||||| | ||||| ||| | || | | || | ||| || Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCT-TAACTGTAGCTGT 4909 Query 186152 GTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 186211 ||||| ||||| | |||||||||||| | | || | ||||| || ||| | || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 186212 AGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGG 186271 ||||||| | | || ||| | ||| | || ||| | |||| |||||| || | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 186272 AGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTAT 186331 || |||| | || || ||| | ||||| |||||||| |||||| |||||||| Sbjct 4788 GGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 4729 Query 186332 CCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCT 186391 ||||| || ||||| ||||| ||||| || |||||||| || || ||| ||||||| | Sbjct 4728 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 4669 Query 186392 CATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAAT 186451 ||||| ||| | ||||| | |||||||| ||||| |||||||| ||||| || Sbjct 4668 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 4609 Query 186452 CTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACAT 186511 || ||||||| || ||| | ||||| ||||| |||||||| | |||||||||||||| Sbjct 4608 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 4549 Query 186512 GATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGT 186571 ||||||||||||||| || | |||||||| || | || ||||| ||||| | |||||| Sbjct 4548 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 4489 Query 186572 AGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGAC 186631 |||||| || | | |||||||| || || || |||||| || ||| | || Sbjct 4488 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAAC 4429 Query 186632 GCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGG 186691 ||| ||||||||| ||||| ||||| || |||||||||||||||||||| || || || Sbjct 4428 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTTGG 4369 Query 186692 AATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGG 186751 |||| ||| || || ||||||||||||||||||||| | |||||||| || | || Sbjct 4368 TGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGG 4309 Query 186752 TCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTT 186811 | | ||||| ||| |||| || | ||| | || | ||| | | || |||||||| Sbjct 4308 TTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTT 4249 Query 186812 TGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAA 186871 |||| ||| ||| | | ||||| || ||||| || || || || |||||||| || || Sbjct 4248 TGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAA 4189 Query 186872 TATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAA 186931 |||| |||| || |||||| | | | |||||||| || ||| |||||||||||||| Sbjct 4188 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAA 4129 Query 186932 CTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCTGTGATA 186979 |||||||| || || || || || ||| | || ||||| || | ||| Sbjct 4128 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 4081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622017057463200