Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq2348 755 0.0 >seq2348 Length=90098 Score = 755 bits (836), Expect = 0.0 Identities = 749/961 (78%), Gaps = 10/961 (1%) Strand=Plus/Plus Query 163949 ACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGG-C 164007 || || || ||||| || ||||||||||||| || | ||||| |||| | | | | Sbjct 63545 ACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGAT-CCCTACATTATTAAC 63603 Query 164008 AGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCAT 164067 ||| || | || ||||||||||| ||||||| || ||||| || || |||||||| || Sbjct 63604 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 63663 Query 164068 CCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTAT 164127 ||| ||||| || ||||| || || | || ||||||||||| ||| | ||||| ||||| Sbjct 63664 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTAT 63723 Query 164128 CCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTG-- 164185 || |||||||||||| ||| | ||||||||||| | |||||||| || ||||| Sbjct 63724 TCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGC--GTCTGTA 63781 Query 164186 GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGC 164245 ||||||||||| |||||||||||||||| |||||| || || || |||||| | | || Sbjct 63782 GACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGT 63841 Query 164246 AT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTT 164303 | || |||| ||||||| ||||| ||||||||| |||||| | || |||||||||| Sbjct 63842 GTAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTT 63899 Query 164304 GGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATC 164363 |||||| |||||| | ||| ||||| || |||||||| |||||||| ||| | | || | Sbjct 63900 GGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACC 63959 Query 164364 CTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACT 164423 | |||| |||||| |||||||||| |||||| | || |||||||| || ||||||| Sbjct 63960 CAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACT 64019 Query 164424 ACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCG 164483 |||||| || ||||| || || |||||||| || |||||||| ||||||||| || | Sbjct 64020 TCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTG 64079 Query 164484 TAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTT 164543 | || ||||||||||| || ||| | |||||||||||||| ||||| || || || ||| Sbjct 64080 TTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTA 64139 Query 164544 CGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGG 164603 | | ||||| || || || || ||||| |||||||| ||||| || | Sbjct 64140 GTTTAATCCGTGAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAG 64199 Query 164604 AAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAAT 164663 |||||||||| ||||||||||| || || |||||||||||||| ||| | || ||||||| Sbjct 64200 AAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAAT 64259 Query 164664 ACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCG 164723 |||| ||||||||||| ||| | | ||||||||| | || || ||||| ||||| | Sbjct 64260 ACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAG 64319 Query 164724 GTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 164783 |||||||||| |||||||| || ||||||| |||||||||||| | ||||| ||||||| Sbjct 64320 GTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACT 64379 Query 164784 TCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCA 164843 ||||||| || | | ||| | || ||||||||| ||||||| ||||| ||| || ||| Sbjct 64380 TCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCA 64439 Query 164844 ACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCG 164903 ||||||||| | | || |||||||| |||||||| ||||| || |||||||||||||| | Sbjct 64440 ACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAG 64499 Query 164904 A 164904 | Sbjct 64500 A 64500 Score = 553 bits (612), Expect = 2e-152 Identities = 732/1008 (73%), Gaps = 6/1008 (1%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | ||| |||| |||||||| ||| |||| ||||| || ||| | | ||| Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || || || | |||||| |||| || ||| | || || |||||||| || || |||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGT 165343 || || || ||| | || ||| || | ||||| ||||| ||| | |||| || || Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAA-CTTCTTAACTGTAGCTGT 4909 Query 165344 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 165403 || || || ||| | |||||||||||| | | | ||||||| || ||| | || Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 4849 Query 165404 AGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGG 165463 ||| || || | || ||| ||| | || ||| | ||||||||||| || | || || Sbjct 4848 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 4789 Query 165464 AGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGACTTATCGGTA 165522 || |||| | | || || ||| || || || || |||||| | || || ||| | |||| Sbjct 4788 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 4730 Query 165523 TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTC 165582 ||||||| || ||||| ||||| || || || ||||| || ||||||||| ||| || Sbjct 4729 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 4670 Query 165583 TTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAA 165642 | || |||||| | |||||| | |||||||| || || || || || ||||| | Sbjct 4669 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 4610 Query 165643 TCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACA 165702 | ||||||||||| | ||| | ||||| |||||||||||||| || ||||| || |||| Sbjct 4609 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 4550 Query 165703 TGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAG 165762 ||||||| |||||||| || ||||| || ||| | | ||||| |||||||| | ||| | Sbjct 4549 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 4490 Query 165763 TAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATA-GT 165821 |||| || || || | ||||||||||| || || || ||| || ||| | | Sbjct 4489 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACACCA 4431 Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 || || ||| ||||||||||| ||||| || || ||| | |||||||| || |||||| Sbjct 4430 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTT 4371 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATG 165941 ||| ||||||| || || ||||||||||| ||||| ||| | |||||||| || | Sbjct 4370 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 4311 Query 165942 GGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGAT 166001 || | |||||||||||| ||||||| | ||| | ||| | || | | || ||||| Sbjct 4310 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGAC 4251 Query 166002 TTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAA 166061 ||||| ||||| ||| || | || ||||| |||||||| |||||||| |||||||| ||| Sbjct 4250 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 4191 Query 166062 AACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAG 166121 || ||| | | || ||||| | | | ||| |||| | |||||||| ||||| Sbjct 4190 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 4131 Query 166122 AACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || ||||| ||||| || || || || ||| | || ||||| |||||| Sbjct 4130 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557606581135200