Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq2348 711 0.0 >seq2348 Length=90098 Score = 711 bits (788), Expect = 0.0 Identities = 731/952 (77%), Gaps = 4/952 (0%) Strand=Plus/Plus Query 177625 AATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCT 177684 || ||| | || |||||||||||||||| | ||||||||||| | | | ||| | Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 177685 ATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAA 177744 | ||| |||||| |||||||| |||| || ||||| || || ||||| || ||||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 177745 CCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCT 177804 || || ||||| || || | || || |||||||| || | ||||| ||| |||| | Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 177805 TCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGG 177864 ||||||||||||||| | |||||||| || | |||||||| || ||| | || || ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 177865 CTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCG--GTATCTATG 177922 || ||||| |||||||||| |||||| || | || |||||| | | | ||| || || Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 63849 Query 177923 CATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTG 177982 | |||||||| ||||| ||||||||| ||||| |||| |||||||| ||||| | | Sbjct 63850 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 63908 Query 177983 TAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTC 178042 |||| | ||| |||||||| || |||||| ||| |||||| | |||| || |||| | Sbjct 63909 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 63968 Query 178043 AAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTG 178102 ||||| |||||||| | |||||| | |||||| ||| || ||||||| |||| | | Sbjct 63969 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 64028 Query 178103 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTG 178162 | ||||||||||| |||||||| || |||||||| ||||| ||| || || ||||||| Sbjct 64029 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 64088 Query 178163 TCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC 178222 | |||||||| ||| | |||||||| ||||| |||||||| || || || | | | Sbjct 64089 TGTTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCC 64148 Query 178223 GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 178282 ||||||| || | | | ||||| |||||||| || || ||||||||||| | Sbjct 64149 GTGAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAA 64208 Query 178283 CCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCT 178342 | ||||||||||| ||||| || |||||||| || || | ||||||||||||||| | Sbjct 64209 CTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTT 64268 Query 178343 TCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 178402 |||||||||| ||| | | ||||||||| | || || ||||| ||||| |||||||||| Sbjct 64269 TCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGT 64328 Query 178403 TCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 178462 | ||||||||||| ||||||| |||||||||||| | ||||| |||||||||||||| | Sbjct 64329 TAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAAT 64388 Query 178463 CCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTG 178522 | | | ||||| || || || | ||||| ||||| ||| || |||||||||||| Sbjct 64389 CAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTG 64448 Query 178523 GTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGA 178574 | | ||||||||||| |||||||| ||||| || |||||||||||||| || Sbjct 64449 ATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 583 bits (646), Expect = 1e-161 Identities = 743/1020 (73%), Gaps = 2/1020 (0%) Strand=Plus/Minus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 ||||| || ||||||||||| | || || ||||| ||||| ||| |||||||||||||| Sbjct 5099 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 5040 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 ||| | | || || || || | | ||| | || || ||| | || || || || || Sbjct 5039 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 4980 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || ||||| || || || | |||||||| || | |||||||| || ||| | Sbjct 4979 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTA 4920 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 |||| ||||||||||| ||||| | | | || ||||| | | | ||||||| Sbjct 4919 ACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGA 4860 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 ||||| || || |||||||| || ||||| ||| | || ||| ||||| ||||||| Sbjct 4859 CCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTC 4800 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTT-CGGCAGTTTGAAATCGCACG 179197 || | || || || || | | || || ||| || || || || |||||||| || || Sbjct 4799 GCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCG 4741 Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 ||| || ||||||||||| || |||||||| || ||||| || || || || || || || Sbjct 4740 TCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGT 4681 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 ||||| || | || |||||| | ||||| | ||||||||||| || ||||| Sbjct 4680 TTCTGTATTCTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGG 4621 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 ||||||||| |||||||| |||||| | ||| |||| || ||||| |||||||| || || Sbjct 4620 AGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAA 4561 Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437 || ||||||||||||||||||||||| || | || || ||| | | | ||| ||||| Sbjct 4560 TCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCA 4501 Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497 ||| ||||| ||||| |||||| | || ||||| |||| | ||||||||| || Sbjct 4500 TGGAGCTACTGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC 4441 Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557 ||| || |||||| ||| || || ||||| ||||| || || ||| | |||||||| Sbjct 4440 TTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTC 4381 Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 || || |||||| | || || || || |||||||| |||||||| ||||| ||||| Sbjct 4380 ACAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGT 4321 Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677 ||| || | ||| | ||||| | ||||||| | ||| | ||| | ||| | || Sbjct 4320 TCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAG 4261 Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737 ||| ||||||||||| || |||||| | | || || || ||||| || || || || || Sbjct 4260 AGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTT 4201 Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797 |||||| || || ||| |||| || |||||| | | | |||||||| || || || Sbjct 4200 CTATACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCA 4141 Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATA 179857 |||||||||||| |||||||| || || || || || ||| | || ||||| || | ||| Sbjct 4140 ACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 4081 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18367 TAGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACG 18426 |||||| | || |||||||||||| || |||||||||||||||||||||||| ||||||| Sbjct 51138 TAGGGTCGATGCCCGAGTGGTTAAAGGGGGCGGACTGTAAATCCGCTGGCTCAGCCTACG 51079 Query 18427 GGGGTTCAAATCC 18439 ||||||||||| Sbjct 51078 TTGGTTCAAATCC 51066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596256066657600