Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq259 140 7e-28 seq802 125 1e-23 seq2149 96.9 7e-15 seq6464 91.5 3e-13 >seq259 Length=12200 Score = 140 bits (154), Expect = 7e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||||| || || |||| ||||| || ||||| || ||||||||||||| Sbjct 5803 ACCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGA 5744 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||| || ||||| || || ||||| ||||| || | || || || ||| || Sbjct 5743 CAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGG 5684 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||| || ||||| ||| || || | ||||| ||||| | || | Sbjct 5683 GATACCCTCCTTGTCCTGAATCTTCTGC-TTCACATTCTCGATCGTGTCACTGGGCTCCA 5625 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| ||||| ||||||| |||||||| || || ||||| Sbjct 5624 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 5576 >seq802 Length=4370 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||| ||| | |||| || || || ||||| || ||||||||||||| Sbjct 260 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 319 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || || || || || || || || || || | || || || || ||| Sbjct 320 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 379 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| |||||| || || | ||||| || || | ||||| Sbjct 380 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 439 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 440 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 486 >seq2149 Length=43014 Score = 96.9 bits (106), Expect = 7e-15 Identities = 195/287 (68%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 299559 CATCGACGTCATGGCATACCCCATCAAAGAAGCGCAGACA-TCGAACATGCTGCGCCGCC 299617 ||||||| ||| ||||| || | ||||| ||| | |||||||||| | ||||| Sbjct 34295 CATCGACATCAACTACTACCCTGTCGAGGAAGC-CAGGCGCTCGAACATGCGACACCGCC 34353 Query 299618 CCATCGGCGTGGGGGTACAAGGACTTCAGGATGTGTTCTTCAAACTGAAGCTCCCATTTG 299677 ||||||| | || || || || | ||| | ||| |||| || ||||||| | Sbjct 34354 CCATCGGGATCGGCGTGCAGGGTTTGGCGGACGCCTTCATCAAGATGCGATTCCCATTCG 34413 Query 299678 ACTCTCCGGAGGCCAGGGATCTTAACCGGGAAATCTTCGAGCATATCTACTACGCTGCCG 299737 | |||||||||||| | | |||||| ||| || |||||| || |||| || || | Sbjct 34414 AGTCTCCGGAGGCCCAGCAGCTTAACAAGGACATTTTCGAGACCATGTACTTCGGGGCGG 34473 Query 299738 TTGAAGCGTCGGTAGAACTCGCGGAAATCCACGGGCCTCACCCCACCTTCGAAGGGTCTC 299797 | || |||||| | || ||||| | | || || || ||||||| || || | Sbjct 34474 TAGAGGCGTCGATGGAGATCGCGATGAAGGAGGGTCCCTACGAGACCTTCGCCGGCTCCC 34533 Query 299798 CTGCAAGTAAGGGCATCCTCCAATACCACTTGTGGGATGTTACCCCC 299844 | || |||||| || |||||| | || |||||| || |||||| Sbjct 34534 CCATGAGCAAGGGCGTCTTCCAATTCGACATGTGGGGCGTGACCCCC 34580 >seq6464 Length=44462 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || |||||||| || | || || || ||| || || |||||| Sbjct 38430 CCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCC 38489 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| ||||||||| || || | || || ||||| | || || || | ||| Sbjct 38490 TTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTA 38549 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||||| ||||||||||| || ||||| Sbjct 38550 ATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 38587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046647198166440