Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq259 122 6e-23 seq6464 114 9e-21 seq802 111 1e-19 >seq259 Length=12200 Score = 122 bits (134), Expect = 6e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || || |||||||| || | | |||| |||| |||||||||||||| ||||| Sbjct 5767 CTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAA 5708 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || | ||||||||||| | || | ||| ||||| ||| ||||||||||||| | Sbjct 5707 AATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTCTGCTTCACATT 5648 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| || ||||| || | ||| || ||||| ||||| || ||||| || Sbjct 5647 CTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAAC 5588 Query 44326 GAAGATTTGCAT 44337 ||||||||||| Sbjct 5587 AAAGATTTGCAT 5576 >seq6464 Length=44462 Score = 114 bits (126), Expect = 9e-21 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || |||||||| |||||||| || | ||||||||||| | || | || ||||| Sbjct 38433 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 38492 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||||| ||||||| | | ||||||||| || ||||| |||| ||||| Sbjct 38493 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 38552 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||| |||||||| ||||| ||||||||| Sbjct 38553 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATG 38588 >seq802 Length=4370 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| |||| ||| | || ||| || || |||||||| || | || ||| |||| Sbjct 274 CAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTC 333 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||| || || || || | ||||||||||| | || | || ||||| || Sbjct 334 TTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTC 393 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||||||| || | ||||| ||| || || || |||| || || || Sbjct 394 TTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGT 453 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||| |||||||| |||||||| |||||| Sbjct 454 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359960302552620