Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6464 118 3e-21 seq802 113 1e-19 seq259 109 1e-18 >seq6464 Length=44462 Score = 118 bits (130), Expect = 3e-21 Identities = 127/166 (77%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||||||||| || || || || || || || || || | || |||| ||| || | Sbjct 38584 CAAATTTTCGTTAAGACCCTGACGGGCAAGACCATTACTTTGGACGTGG--AGCCCAGCG 38527 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || |||||||| |||||||| || || ||||| || || |||| Sbjct 38526 ACACCATTGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGGATCCCCCCTGATCAGC 38467 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 | || || || || ||||| || |||||||| ||||| ||||| || Sbjct 38466 AGCGCCTCATTTTTGCCGGCAAGCAGCTCGAGGATGGGAGGACACT 38421 >seq802 Length=4370 Score = 113 bits (124), Expect = 1e-19 Identities = 151/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || ||||| | || || || || ||| Sbjct 483 CAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGA--GCCCAGCG 426 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | |||||||| || || || ||||||||||| ||||| || || || || || || |||| Sbjct 425 ATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAGC 366 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || ||||| ||||| ||||| ||||| ||| | || || | || || ||| Sbjct 365 AGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAACA 306 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||| ||||| |||| |||| Sbjct 305 TTCAGAAAGAGTCAACCTTGCA-CTTG 280 >seq259 Length=12200 Score = 109 bits (120), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || || || || || || || || || ||||| ||||| ||||| || ||| Sbjct 5579 CAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGA--GCCCAGTG 5636 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| |||||||| || || || |||||||||||||| || || ||||| || || |||| Sbjct 5637 ACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAGC 5696 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || || || || ||||| || || || | || | | || || ||| Sbjct 5697 AGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACTACAACA 5756 Query 178102 TCCAAAAAGAATCAACACTGCAT 178124 | || ||||| || || || ||| Sbjct 5757 TTCAGAAAGAGTCTACCCTACAT 5779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203625399550840