Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq19097 100 2e-16 >seq19097 Length=7688 Score = 100 bits (110), Expect = 2e-16 Identities = 202/300 (67%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 ||||||| | || || | || || || |||||| | ||||| || ||||||||||| || Sbjct 2703 GGGGGACTTGGGGCCAGTGTATGGGTTTCAGTGGCGGCATTTCGGGGCGGAATATAAGGA 2762 Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 || | | ||| | | || |||||||||||| | | | || || || || Sbjct 2763 TATGCACGCTGATTATACGGGGAAGGGCATCGATCAGCTGGCAGCGGCGATTGAGACGAT 2822 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 ||| | ||||| || ||||| || ||| | ||| | ||||| || ||| | Sbjct 2823 TAAGAAGAACCCGGAGGATCGACGGATTATTGTCTCGGCGTGGAACCCGGCCGATTTGGG 2882 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027 |||| | || || ||||||| ||| |||||||| ||||| || || || || || Sbjct 2883 GAAGATGGCCTTGCCGCCTTGTCACATGTTTTGTCAGTTCTACGTGGCCAATGGGGAGTT 2942 Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087 |||||||| | ||||| | | |||||||||| | || || ||||| || ||||| Sbjct 2943 GTCCTGCCAGATGTACCAACGCAGTGCGGATATGGGCTTGGGCGTGCCGTTTAATATTGC 3002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399388162691595