Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq17508 132 6e-26 >seq17508 Length=3941 Score = 132 bits (146), Expect = 6e-26 Identities = 554/867 (64%), Gaps = 8/867 (1%) Strand=Plus/Minus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 || |||| |||||| || || ||||| | | || ||| || || ||||| || || Sbjct 2967 GAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTATACTGGATAATCTCCGTACAC 2908 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830 | || || || || |||| ||| || || |||||||| |||||||| || Sbjct 2907 AAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTACTCTTCAGATTACACGCGTCT 2848 Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACG 53890 |||||||| || | ||||| || || || ||||| || || | |||||| ||| | | Sbjct 2847 TTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAGTCCAAAATCGCGAACCACAGG 2788 Query 53891 ACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTA--TACAATC 53948 | | || | | ||| ||||| | |||| ||| || | |||| Sbjct 2787 TCTTGCGCACGCACGGTTTTCTTGA--CTCTTCCCGCTTTTTCATATTGCAGGTACAGGG 2730 Query 53949 GTTCAAACTCGTCTCCCCAAACATT-GTCCAATCCAGGACATTCATCCGGACACATCAAC 54007 || ||| | | | || || | | |||| ||||| |||| ||| |||||||||||| Sbjct 2729 CCTCGAACGCCT-TGCCATGGCAGTCGCCCAAGCCAGGGCATTGATCGGGACACATCAAC 2671 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 |||||| | || || |||| ||| | |||||||| | |||||| ||||| || | ||| Sbjct 2670 GACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAATCAGGGATCCACAG-CCCATA 2612 Query 54068 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 || ||||| | | | || || || || ||| || | | || || | | | Sbjct 2611 GAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTTTCCTCAAGTCAAGCACCTC 2552 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | |||||| | ||||||||| || | ||| || | | | || ||||| || || Sbjct 2551 AAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAGGCCCCCGGCCGCTTCCCCCC 2492 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 |||||||| | |||| || || | | | || | || ||| || | | |||||| Sbjct 2491 GCCCTGATCAACATATCGCGCCGTCACGTCAAACACACGCAGCATCGGCACTAAACCATT 2432 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 54306 | | || || ||||| ||||||| ||| || |||||||| | || | Sbjct 2431 GCTCGTCCCCTTCGTCCCCTTGATATAGGCTCCGTGCGCGCGAATATTGTGCACCGACAA 2372 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 ||| ||||| || || ||| || | ||||| | || ||||||||||| || || Sbjct 2371 ACCAATCCCACCCGCTGCCTTACTAATCACCGCGCACTGCTTCAACGTATCATAAATCCC 2312 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 | | || ||| | ||| | | |||||||| |||||| ||| | || || Sbjct 2311 CACAATCGAATCCGACTGCATCGTCAACAGAAAACACGAAGACATCTGGGGGAAACGCGT 2252 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || |||| || |||||||| || ||||| ||||||| || | | | | | || Sbjct 2251 CCCGGCATGGAACAAGGTAGGCGACGCGTGGATAAACCACTTATTACTCATCAATTCATA 2192 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 |||||| | || | |||| ||| ||| || || | || || ||||| | ||| Sbjct 2191 CGTCTCCAATGCCGCCTCTAAGTCCTTCCCATGTATCCCCAACGCCACCCGCATCACCAT 2132 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTT 54573 || ||| || | ||| || | ||| || Sbjct 2131 GTACTGCGGGCGTTCCACCACCTTCTT 2105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593545034617680