Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq19097 149 7e-31 >seq19097 Length=7688 Score = 149 bits (164), Expect = 7e-31 Identities = 402/605 (66%), Gaps = 15/605 (2%) Strand=Plus/Minus Query 145516 TCCTTCCCCTCTCCCCCCAATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGG 145575 ||| ||||||| || ||| || |||||||||| ||| |||| | | || || Sbjct 3278 TCCCTCCCCTCCCCTCCC---TACACCGCCATCTTCATTTTGATGTTCTCCTGCGGCGCA 3222 Query 145576 TAGCCCTCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCAC--CCGCCTCA 145633 || ||||| | || ||||||||| | |||||||| ||| ||| | ||| | Sbjct 3221 TACCCCTCAATCGTAAAGTCCTCAAACACAAAGTCATCGATGCCCTTCTTGTCCGGGTT- 3163 Query 145634 GGATCCTGAGCCTGGGAAAGG-GCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCC 145692 ||| ||| |||| || ||| |||| ||| |||| || ||||| || ||| Sbjct 3162 -GATAAACAGCTTGGGGAACTTGCCTGGGG-TCCGCGTCAATTGCTCCTTCAAGGCCTCG 3105 Query 145693 ACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGG 145752 || |||||| ||| ||||| || ||||| | || | || ||||| | || | Sbjct 3104 ACATGGTTGGAGTACACGTGGGCATCCCCAATCGTATGCACAAACTCCCCCGCCTTCAAC 3045 Query 145753 CCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACC 145812 || | || || |||| |||| || | ||| || || || || ||||| Sbjct 3044 CCACACACCTGCGCCACCAACCGCGTCAACAACGCGTAAGACGCAATATTAAACGGCACG 2985 Query 145813 CCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACG 145872 |||| ||||| ||| | ||| ||||||| ||||||||| | |||||| |||||| Sbjct 2984 CCCAAGCCCATATCCGCACTGCGTTGGTACATCTGGCAGGACAACTCCCCATTGGCCACG 2925 Query 145873 TAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTC 145932 |||||||| || | | ||| || ||||||| |||||| || || ||||||||| Sbjct 2924 TAGAACTGACAAAACATGTGACAAGGCGGCAAGGCCATCTTCCCCAAATCGGCCGGGTTC 2865 Query 145933 CAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCC 145992 || || | || | | || | ||| |||||| |||| ||| | | ||| | | Sbjct 2864 CACGCCGAGACAATAATCCGTCGATCCTCCGGGTTCTTCTTAATCGTCTCAATC--GCCG 2807 Query 145993 CTG--AGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCC 146049 ||| ||||| || | ||||| |||| ||||| | | || | ||| || | ||| Sbjct 2806 CTGCCAGCTGATCGATGCCCTTCCCCGTATAATCAG-CGTGCATATCCTTATATTCCGCC 2748 Query 146050 CCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCC 146109 ||||| |||| |||||| ||||| || || ||||||| |||||| ||||| || ||| Sbjct 2747 CCGAAATGCCGCCACTGAAACCCATACACTGGCCCCAAGTCCCCCTCCTCCCGATGACCC 2688 Query 146110 AGCCC 146114 || || Sbjct 2687 AGTCC 2683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589901318535640