Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13286 185 9e-42 seq22358 176 5e-39 seq5368 122 9e-23 seq21338 120 3e-22 seq17171 93.3 4e-14 >seq13286 Length=1322 Score = 185 bits (204), Expect = 9e-42 Identities = 181/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || ||||||||||||||||| ||||||| || || Sbjct 888 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAAACCATCACGCTCGACGTGGAGCCC 947 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | |||| | ||| |||| || | ||||| ||||||||||| | || Sbjct 948 AGCGACACGATCGAGAACG-TGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGA 1006 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| |||||| || |||||||| |||| |||||| || ||||| Sbjct 1007 CCAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTTTCGGACTA 1066 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| ||||| | |||||||| || | ||||| Sbjct 1067 CAACATCCAGAAGGAGTCCACCCTGCACTTGGTGTTGCGTCTGCGTGGCGG 1117 >seq22358 Length=3586 Score = 176 bits (194), Expect = 5e-39 Identities = 180/234 (77%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || |||||||| ||||||||| |||| ||||| || Sbjct 3096 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCC 3155 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | | | | | ||| |||| || | ||||| ||||||||||| | ||| Sbjct 3156 AGCGACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 3215 Query 40807 CAGCAACGACTCATCTACGC-GGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || ||||||| ||| |||||| |||||||| |||| ||||| ||| ||||| Sbjct 3216 CAGCAGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTA 3275 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||||||||| |||||| |||| ||||| | || |||| || | |||||||| Sbjct 3276 CAACATCCAAAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGCGAGGCGGCGG 3329 >seq5368 Length=5397 Score = 122 bits (134), Expect = 9e-23 Identities = 133/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| || || || |||||||| ||||||||| |||| || || | Sbjct 2761 AAAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTGGAGCC 2702 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||||| | | | |||| | || | || || | ||||| |||||||||||| | | Sbjct 2701 CAGCGACACCATCGAGAACG-TGAAACAGAAGATCCAGGACAAGGAGGGCATCCCCCCTG 2643 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCA 40858 ||||||| |||||||||| || ||||| |||||||| || | || || |||| Sbjct 2642 ACCAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACGCTCA 2589 >seq21338 Length=400 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| |||||||| || ||||||||||| || ||| | |||| | || Sbjct 387 ATGCAGATCTTCGTCAAAACGCTGACTGGCAAAACCATTACAGTCAATATCGATCCTTCC 328 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | || | ||| | | ||| | ||| ||||||||||| | || || Sbjct 327 GACACCATCTGGACTTTGAAGCAGGAGATTGAAGTCAAGGAGGGCATCCCGCCCGATCAA 268 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| |||||||| ||||| |||| ||| |||||| || |||||||| Sbjct 267 CAGCGGCTCATTTACGCGGGTGAACAGGTGGAGGACACGCGCACAGTCGCGGACTACAAA 208 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 207 ATCCAGAAGGAGTCCACTCTCCACCTCGT 179 >seq17171 Length=4834 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||||||||||||| | || | || | || Sbjct 3057 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAAACCATCACCATTGATATGGATCCTTCC 2998 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | || | || | || || || ||||||||| || | | Sbjct 2997 GAGACCATCTGGACTGTGAAACAGAAGGTTAAGGAGTGGACGGGCATCCCGGCCGGTGAA 2938 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || |||||||| | | |||||| ||| || |||||| Sbjct 2937 CAACGGCTCATCTTCGCTGGTAAACAGCTAAAGGCTTTGCGCACGCTCGCGGAGTACAAC 2878 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||| |||| |||| || || ||||| |||||| Sbjct 2877 ATCCAGAGGGAGTCCACCCTCCACCTAGTCTTGCGC 2842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515065980250160