Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13286 132 4e-26 seq22358 127 2e-24 seq21338 105 6e-18 seq5368 102 7e-17 seq7782 86.0 5e-12 >seq13286 Length=1322 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | || ||||| || || |||||||| || | |||||| || Sbjct 1103 CAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCCGTC 1044 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| ||||||| |||||||| ||||| || |||||||||||||| Sbjct 1043 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 984 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || ||||| || || | |||| ||||| || ||| || |||| || | || Sbjct 983 CTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGATGGT 924 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||||| || || || || || ||||| Sbjct 923 TTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 891 >seq22358 Length=3586 Score = 127 bits (140), Expect = 2e-24 Identities = 155/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| ||||| |||||||| || | ||||| ||||| Sbjct 3308 ACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCC 3249 Query 118590 AGCTGTTTTCCA-GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| ||||||| |||||||| ||||| || |||||||||||||| Sbjct 3248 AGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 3189 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||||| || || | |||| |||||| || |||||| |||| ||| | || || Sbjct 3188 GATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGACATCGAGGGTGATGGTCTT 3129 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || || ||||| Sbjct 3128 GCCCGTCAGGGTCTTGACGAAGATTTGCAT 3099 >seq21338 Length=400 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || || ||||| || | |||||||| ||||| | ||| Sbjct 184 GTGGAGAGTGGACTCCTTCTGGATTTTGTAGTCCGCGACTGTGCGCGTGTCCTCCACCTG 243 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||||| ||||| ||||| |||||||| || |||||||||||| || ||| | Sbjct 244 TTCACCCGCGTAAATGAGCCGCTGTTGATCGGGCGGGATGCCCTCCTTGACTTCAATCTC 303 Query 118655 TTGTTTAACCTGTTC-GACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 || || | || | || |||||| | |||| | ||| || | |||||||| | Sbjct 304 CTGCTTCA-AAGTCCAGATGGTGTCGGAAGGATCGATATTGACTGTAATGGTTTTGCCAG 362 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| || || |||||||| Sbjct 363 TCAGCGTTTTGACGAAGATCTGCAT 387 >seq5368 Length=5397 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||| ||||| || || || ||||||| |||||||| || || || ||||||||||| Sbjct 2602 ATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTT 2661 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| || || ||||| || | |||| |||||| || ||| || |||| ||| | Sbjct 2662 GTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGAT 2721 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| || || || || || ||||| Sbjct 2722 GGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 2757 >seq7782 Length=16676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 216/326 (66%), Gaps = 2/326 (1%) Strand=Plus/Minus Query 133044 CGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGA 133103 |||||||| ||||||| || | ||||| ||||||||| | |||||| |||| Sbjct 7924 CGGTCGGCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTCTTGTAGAGC 7865 Query 133104 TTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATC 133163 | ||||| | | || || | | | ||| |||||||| || | | ||| ||| Sbjct 7864 TCCTTGAGCTCGCGGGGGATGCTGGCCACGTTTTGCACGGAGCCACGGTTGCCCATGATC 7805 Query 133164 TTGTTGCGCAATTCCGGAGTGTAAATGTCGA-GATCGATTAGCGCTTTGACGAGATACTG 133222 | |||||||| || || || | | | | | ||||| || | ||| || |||| Sbjct 7804 TGGTTGCGCACCTC-GGCGTTCCACAGCCCACGCTCGATCAGGTCGCTGAGCAGGTACTT 7746 Query 133223 GTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGG 133282 |||||| | ||||| || || || || |||| | || | || || || || || Sbjct 7745 GTTGACGATGGTGAACTCACCCGCTAGCACACGTCGGGAGTACATGTTGGAGGTAAAGGG 7686 Query 133283 TTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCAC 133342 |||| || ||||||||||| || |||||||| || | || ||||||||| ||| | Sbjct 7685 CTCGACTGACTCGTTGTTGCCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGGGCGCGAG 7626 Query 133343 CAACAAAGAGTTTCTTACGCCGTACT 133368 || | || || | ||||||| || Sbjct 7625 CAGGAGGGAATTGCGCACGCCGTGCT 7600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433704609655372