Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq13286 188 8e-43 seq22358 161 1e-34 seq5368 129 7e-25 seq10165 89.7 6e-13 seq17171 86.0 7e-12 >seq13286 Length=1322 Score = 188 bits (208), Expect = 8e-43 Identities = 173/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| |||| ||| |||||| || || ||||| || | || || ||| | Sbjct 1106 ACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCC 1047 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| ||||| ||||||||||||| ||| | || |||||| Sbjct 1046 GTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 987 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| ||||| || | || | | ||||||||| | ||||| |||| |||||| Sbjct 986 GTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGAT 927 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||||||||||| || ||||| || ||||||||||| || Sbjct 926 GGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 >seq22358 Length=3586 Score = 161 bits (178), Expect = 1e-34 Identities = 175/231 (76%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||| ||||| |||| ||| ||||||||| || ||||| || | Sbjct 3326 CCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 3267 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCA-GCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || |||||||| || ||||| ||||| ||||||||||||| ||| Sbjct 3266 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 3207 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| ||||| || | || | | |||||||| | || || Sbjct 3206 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGAC 3147 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||| |||||||| |||||||| || ||||| || ||||||||||| || Sbjct 3146 ATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 3096 >seq5368 Length=5397 Score = 129 bits (142), Expect = 7e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || ||||||||||||||||| | || | || ||||||| Sbjct 2603 TCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 2662 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || ||||| | || | | |||||||| | |||||||||| |||||| Sbjct 2663 TCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATG 2722 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || |||||||| || ||||| || ||||||||||| ||| Sbjct 2723 GTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTTT 2761 >seq10165 Length=1505 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 43062 TGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTG 43121 |||||||| | || | || ||||||||| ||| || || || | || | | |||| Sbjct 4 TGCTGGTCAGGGGGTATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTG 63 Query 43122 TCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 43181 ||||||| ||||| || | ||||||||| |||||||| |||||||| || ||||| ||| Sbjct 64 TCGCTCGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGC 123 Query 43182 AT 43183 || Sbjct 124 AT 125 >seq17171 Length=4834 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | || | ||| |||| | || || ||||| || || || || ||| Sbjct 2843 CGCAAGACTAGGTGGAGGGTGGACTCCCTCTGGATGTTGTACTCCGCGAGCGTGCGCAAA 2902 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 | | |||||| ||||||||||| ||||| || || | ||||||| | || | | Sbjct 2903 GCCTTTAGCTGTTTACCAGCGAAGATGAGCCGTTGTTCACCGGCCGGGATGCCCGTCCAC 2962 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| | | || ||||| | ||| | || ||| | |||| ||| | |||||| Sbjct 2963 TCCTTAACCTTCTGTTTCACAGTCCAGATGGTCTCGGAAGGATCCATATCAATGGTGATG 3022 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||||| |||||||| || ||||| ||||| Sbjct 3023 GTTTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 3057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571647548593480