Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq13286 141 6e-29 seq22358 131 1e-25 seq5368 82.4 5e-11 >seq13286 Length=1322 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || ||||| ||| | || || ||||| ||||||||||| || Sbjct 1117 CCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 1058 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| |||| |||||| || ||||| ||||| |||||||||||| || Sbjct 1057 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 998 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||||||||| | | | |||| ||| | | || ||| Sbjct 997 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 938 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||||||||||||| || || || || || ||||| |||||| Sbjct 937 TCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATC 890 >seq22358 Length=3586 Score = 131 bits (144), Expect = 1e-25 Identities = 167/229 (73%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||| |||| ||| | || || || || ||||||||||| || Sbjct 3326 CCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 3267 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCT-GCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| |||| |||| ||||||||| ||||| ||||| |||||||||||| || Sbjct 3266 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 3207 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||||||||| | || | || | ||| | | ||||| Sbjct 3206 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGAC 3147 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| || || || || || ||||| |||||| Sbjct 3146 ATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATC 3098 >seq5368 Length=5397 Score = 82.4 bits (90), Expect = 5e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 34228 ACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCT 34287 |||| | || |||| ||||||||| || || ||||| ||||||||||| ||| | || Sbjct 2596 ACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCC 2655 Query 34288 CTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCAC 34347 ||||||||| ||||| || || | | | || | ||| | | || || || | Sbjct 2656 CTCCTTGTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAG 2715 Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| ||||| || || || || || ||||| |||||| Sbjct 2716 GGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATC 2758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322978324364960