Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq18594 233 1e-56 >seq18594 Length=7120 Score = 233 bits (258), Expect = 1e-56 Identities = 587/881 (67%), Gaps = 21/881 (2%) Strand=Plus/Plus Query 107689 CACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGA 107748 |||| || | || ||| |||||| || || ||||| |||||||| |||||||| ||| Sbjct 4712 CACTCAGCGACGAGGAGAGAGACTTTCCTATAGCCTATTCGATGGTAATCCATGAGCAGA 4771 Query 107749 TTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCC 107808 |||| | |||||| |||| || | || ||| | |||||||| |||||||||| | Sbjct 4772 TTGAGATGTTTGAAAGGCTCCTCAGGGCTACGTACACACCTCAGAATGTATACTGTGTAC 4831 Query 107809 ACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCT 107868 | ||||| |||||| ||| | |||||| ||||| || | ||||| || || || | Sbjct 4832 ATGTGGACACGAAGTCTCCACAATCTTTCACCGAGGCTGTGGAAGCCATCATCTCTTGTT 4891 Query 107869 TCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAG 107928 |||| |||||||| ||||| ||||| || | || ||||| || ||||| ||| Sbjct 4892 TCCCGAATGTCTTTATGGCAAGTAAACGGGAGAGTATTGTCTATGCGTCTTGGTCTCGAG 4951 Query 107929 TGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACT 107988 | ||||||||||| || || ||| || || | | | ||| ||||||||| Sbjct 4952 TTCAAGCTGACCTCAATTGCATGAGTGATCTGGTAAACTCCAGTGTGGAGTGGAAGTACC 5011 Query 107989 TACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCC 108048 | || ||||| || ||||| || || ||||| || | ||| || |||||||| | || | Sbjct 5012 TTCTCAATACCTGTGGGACTGATTTGCCCATTAAAAGCAACGCAGAGATGGTACGAGCAC 5071 Query 108049 TCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaa 108108 | || || | || || | || ||||||||||||||||||||| | || ||| Sbjct 5072 TGAAAGTGCTCAATGGACAAAATAGTATGGAGTCTGAGGTACCTACCCCACAGAAGAAAC 5131 Query 108109 aTCGCTGGAAATACCGCTATGAGGTGACAG-ACACACTGTACCCT--ACCAGCAAGATGA 108165 |||||| | ||| || | || | | || ||| || || || | || Sbjct 5132 GTCGCTGAGAGAACCATTACAACACCACCGAATCCAGTGTGATCTTCACTGACATAAAGA 5191 Query 108166 AGGACCCTCCCCCTGATAATTTACCC-ATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224 |||| || ||| | || | | ||| ||||| ||||| ||| || |||| || | Sbjct 5192 AGGATCC-CCCTCCCATCAGTGCCCCAATGTTTTCAGGGTCTGCATACATTGTAGCTACC 5250 Query 108225 CGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGA-CTGGTTGAATGGGT 108283 ||| ||||| | || | || | ||||| | | | | ||| || | || ||||| Sbjct 5251 AGAGGGTTTGTGGAGCAATTGTTTCAAAACCC-AGAGGCGAGAGATTTGATGGAGTGGGT 5309 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGAT 108343 || |||||||| ||||| || || || || |||||| | ||||||||| || || Sbjct 5310 GAAGGACACCTACAGCCCGGATGAGCATCTTTGGGCCTCTCTTCAGCGTATACCAGATAT 5369 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||| ||||| | ||| | || ||| || | || ||||||||| |||||| | | Sbjct 5370 GCCAGGCTCCGACCCTCCCAACATCAAATACGATATGACAGACATGAATGCCATATCTCG 5429 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA----GCATGGGGGCGCCT------T 108453 || || |||||| || ||| || |||| | || | |||| | | ||| Sbjct 5430 TCTGGTGAAGTGG-AG--CCATGAAGGAGGAGACATAAGGAATGGTGCCTCCTATGCACC 5486 Query 108454 ATG-CACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 ||| |||| ||| ||||| | | || | | || | || || ||||| || ||| Sbjct 5487 ATGCCACCATGCCATGGAAAATACCAAAGAGGTGTTTGTGTCTATGGTGCCGGAGATCTG 5546 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTT 108553 ||||||| || || | || || ||||| || ||||| || Sbjct 5547 AACTGGATCCTTAAGCAACAGCATCTCTTCGCCAACAAATT 5587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348167818481934