Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq7782 239 1e-57 seq13621 84.2 5e-11 >seq7782 Length=16676 Score = 239 bits (264), Expect = 1e-57 Identities = 690/1053 (66%), Gaps = 44/1053 (4%) Strand=Plus/Plus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| ||| ||||| ||||| ||| || || | |||||||||||| ||| Sbjct 5809 CCATGTACGTCAAGAAGCGCGACGGCCGCCTGGAGGCGGTGCAGTTCGACAAAATCACGG 5868 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 | ||||| |||||||| ||| || || || |||||| ||| || | |||| |||| Sbjct 5869 CCCGCATTAAGAAGCTGGTTTACGGGCTCGATGCCAACTACGTGGACCCGGTGGTCATCA 5928 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 |||| || || || ||||||||| || || || || | || || ||| | | Sbjct 5929 CCCAAAAGGTGATCAGCGGCGTCTACGATGGCGTGACCACCTCGGAGCTCGACGAGCTGG 5988 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGG 248655 | || |||| || || ||| | | ||| ||||| |||| ||| |||||||| Sbjct 5989 CGGCCCAGACTGCAGCCTACTGCTCCAC-GCAGCACCCGGACTTCTCCAAGCTGGCCGCC 6047 Query 248656 AGGATCGCCGTCTCAAGGCTTCACAAAGAAACGA--AAGAGTCGTTCGTCGAAACCATGG 248713 | || |||||||| | || ||||| | |||| |||| || ||| || |||| | Sbjct 6048 CGTATTGCCGTCTCGAACCTGCACAAGAACACGACCAAGA-TC-TTCTCGGAGGCCATTG 6105 Query 248714 --------CTGACCTACATGCCT-------ATGG-------GATGG-----TCGCCGATG 248746 | | ||||| || | || | || ||||||| | Sbjct 6106 AGCAATTCCGCAACTACAAGCACCCCAAGAACGGCCAGCCCGCTGCCCTTATCGCCGAGG 6165 Query 248747 ACGT---CCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACG 248803 |||| | ||| |||||| || |||| | | | | | || || || ||||| Sbjct 6166 ACGTGTACAACATCGTCAT---GGCCAACAAGGAGCGCATCAACTCGGCCATCATCTACG 6222 Query 248804 GCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCA 248863 | || || || ||||| | ||| | ||||| || |||||||| || || || |||| Sbjct 6223 ACCGGGACTTCGACTACGACTACTTCGGCTTCAAGACCCTGGAGAAGTCCTACCTGCTCA 6282 Query 248864 AAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGA 248923 | || || |||| || |||| || ||||||||| | ||||| ||||| |||| | Sbjct 6283 AGATGGACGGCATCGTCATGGAGCGCCCCCAGCACATGATCATGCGCGTGGCCATCGGCA 6342 Query 248924 TTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAAC-GCTGG 248982 | |||||||| ||| | || || ||||||| || | | ||| || ||| Sbjct 6343 TCCACAAGGAGGACGTCGACGCCGCCATCGAGACCTATAACCTCATGTCCCAAAAGCTCT 6402 Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCG 249042 | || |||||||| || || || ||||||||||| ||| | | ||||| ||| Sbjct 6403 -TCACGCATGCCACTCCCACCCTTTTCAACGCCGGCACCCCCCGCCCGCAGCTATCCTCC 6461 Query 249043 TGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAG 249102 ||||| || || ||||| | || ||||| |||| ||||| || ||||| || || || Sbjct 6462 TGCTTCCTCCTCACCATGAAGGAGGACTCCATCGATGGCATCTACGACACCCTCAAGCAA 6521 Query 249103 ACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCG 249162 || || || |||||||| ||||| ||||| | ||| || ||||||||| || Sbjct 6522 TGCGCCGCCATCTCCAAATTCGCCGGCGGGATCGGCGTGTCCATCCACAACATCCGCGCC 6581 Query 249163 AAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGA 249222 | || |||||| || | || || | | |||||||| ||| | || || Sbjct 6582 CGTGACTCCTACATCCGCGGCTCGAACGGTACCTCCAACGGTATCGTGCCCATGCTGCGT 6641 Query 249223 TGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTC 249279 ||| | ||| ||| | | | | |||||| ||| | || ||||| || ||| Sbjct 6642 GTCTTCAACGACACGGCCCGCTACGTGGACCAGGGGGGGGGAAAGCGCAAGGGCTCCTTC 6701 Query 249280 GCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAAC 249339 ||||| || | || |||||||||||| || || |||||||| ||| || ||||| Sbjct 6702 GCCATTTACCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTTGACCTGCGCAAGAAT 6761 Query 249340 AACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTG 249399 ||||||||||||| | |||| |||||||| || || | ||| ||| | || ||| Sbjct 6762 CACGGCAACGAGCTGGAGCGAGCCCGTGACCTGTTTTATGCCCTCTGGACGCCTGATTTG 6821 Query 249400 TTCATGCGCCGCGTCAAGGCCGACGGCGATTGG 249432 ||||||| ||||| || |||||| || ||| Sbjct 6822 TTCATGCAGCGCGTGGAGAACGACGGTGACTGG 6854 >seq13621 Length=8118 Score = 84.2 bits (92), Expect = 5e-11 Identities = 172/251 (69%), Gaps = 20/251 (8%) Strand=Plus/Plus Query 145975 CCTACGTCTACCTCGACCAGGAAGAGCGCCAGGCGTTCGCCTCCGTGC-AGCACGAGTAC 146033 ||||| | ||||| ||| ||||| ||| | | ||| || | || | | ||||| Sbjct 5922 CCTACATTTACCTGGACGTCGAAGAACGCAACACCTTCTCC-CAGTCCGACCACGAAATG 5980 Query 146034 CTCATCACCACCACACAGCGCCAGATGCACTCCATCACGTCCGCCAG----CGCCAAG-- 146087 ||| ||||||| ||||| ||| |||||||| | ||||| | | ||| | Sbjct 5981 CTCGTCACCACGCTCCAGCGTCAGCAAAACTCCATCGCCACCGCCGGACTACCCCAGGAT 6040 Query 146088 TCCGACCAGCTCAAGCTTTACTTCAACCACCCGTCCAACGCTCTCATCTGGTTCGTACGC 146147 ||| |||||||| ||||||||||||||||||||| | || ||| ||| || Sbjct 6041 TCC------CTCAAGCTGTACTTCAACCACCCGTCCAACTTCATTATGTGGGCCGTGCGT 6094 Query 146148 CCCACCGACTTCAAGAAC----CTGC--GCCGCCGCTTCTCCGTCGGACACAAGGACATG 146201 ||| ||| ||||| | ||| | |||||||||||||||||||||||||| Sbjct 6095 CCCCATAACTACAAGACCAACGCTGGAAGGCGCCGCTTCTCCGTCGGACACAAGGATCGT 6154 Query 146202 TTCGACTTCTC 146212 ||||||| ||| Sbjct 6155 TTCGACTACTC 6165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073439092177088