Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq13286 131 1e-25 seq22358 129 5e-25 seq5368 91.5 1e-13 >seq13286 Length=1322 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||||||||| ||| ||||||||| ||||||||||| || ||| |||| Sbjct 1102 AACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCCGTCC 1043 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || || || ||||| || | ||||| |||||||| || | |||||||||||| Sbjct 1042 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 983 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || |||||||| || | | | |||| | |||||| || | || || || Sbjct 982 TGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGATGGTT 923 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||||||| ||||| || ||||||||||| || Sbjct 922 TTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 >seq22358 Length=3586 Score = 129 bits (142), Expect = 5e-25 Identities = 157/213 (74%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| |||||| || ||||||||||| || ||| |||| ||| Sbjct 3308 ACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCC 3249 Query 45188 AGTTGTTTTCCG-GCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || ||||| || | ||||| |||||||| || | |||||||||||| Sbjct 3248 AGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 3189 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || |||||||| || | | | | |||| | ||| || || | ||| || ||||| Sbjct 3188 GATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGACATCGAGGGTGATGGTCTT 3129 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||||| ||||| || ||||||||||| || Sbjct 3128 GCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 3096 >seq5368 Length=5397 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || || ||||| || || | ||||| ||||| || || | ||||||||| Sbjct 2603 TCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 2662 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || || || || | | | | |||| | |||||| || | ||| || Sbjct 2663 TCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATG 2722 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||||||||| ||||| || ||||||||||| || Sbjct 2723 GTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 2760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394960646834611