Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7782 324 1e-83 seq17508 183 3e-41 seq13286 116 3e-21 seq5368 113 4e-20 seq22358 111 1e-19 seq10165 86.0 6e-12 >seq7782 Length=16676 Score = 324 bits (358), Expect = 1e-83 Identities = 1009/1551 (65%), Gaps = 48/1551 (3%) Strand=Plus/Minus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||| |||||||| || || || |||| || || ||||| || || ||||| ||||| || Sbjct 7706 GTACATGTTGGAGGTAAAGGGCTCGACTGACTCGTTGTTGCCTAGGATCTGCGCGGTGGA 7647 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTT-TGAAATTTTAC 22610 |||||| ||||| ||||| | ||| || || || | || |||||||| || | || | Sbjct 7646 AGCGGTGGGCATGGGCGCGAGCAGGAGGGAATTGCGCACGCCGTGCTCCTGGACCTTGGC 7587 Query 22611 TCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATT 22670 | ||| | ||||||||| | ||| || || || | ||||||| ||| ||| Sbjct 7586 GCG-GAGGCCGGGCCAGTCCCAGCGGGTGGAGGGGGTGAC---GCCCCACATGTCGAATT 7531 Query 22671 GCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGG 22730 | || ||||| || ||| ||| | |||| ||||| || || | || || Sbjct 7530 GGAAGACGCCCTTGCTGATGGGGGAGCCGGCAAACGTCTCGTAGGGGCCCTCCTTCATGG 7471 Query 22731 CAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA 22790 ||| ||| | || |||| |||||| | || || ||||||||||| | |||||||| Sbjct 7470 CAATTTCCATGGAGGCTTCCACGGCGCCGAAGTACATGGTCTCGAAGATGTCCTTGTTCA 7411 Query 22791 ATTCG---GCGGC-GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCC 22846 | | ||| | || ||| ||| | || | |||||| | | ||| || |||||| Sbjct 7410 GCTGGTGCGCGTCCGGAGAC----TCGAAGGGGAACCGCATCTTGATGAAGGCATCCGCC 7355 Query 22847 ATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGC 22906 | || || || || || ||||| ||||||| || || || || ||||| | Sbjct 7354 AGGCCTTGGACACCAATGCCGATGGGTCGGTGGCGCATGTTGGAACGCTTGGCCTCCTCC 7295 Query 22907 AAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATN 22966 | ||| || | || ||||| | ||||| ||| | |||||| | || || || Sbjct 7294 ACAGGGTAGAAGTTGATGTCGATGACGCGGTTCAGGTTGCGGGTCACCACCTTGGTGATC 7235 Query 22967 NNNNNNNNNNNNTCAAAGTCGTAAAC---------------GCCCGATTG----TACA-- 23005 | | |||||| |||||| | | || Sbjct 7234 TCGTACAGACGCTGCAGGTCGTAGGTAGGGGCCTTGCCGCTGCCCGAAGGCTCCTCCAGC 7175 Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 ||||| || | || ||||||||| ||||| |||||||||||||| || ||| Sbjct 7174 ACAAAGGCCGAGAGGTTGACCGAGGCAAGGTTGCAGACGGCCACCTCGTCGGGGGCGGTG 7115 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 ||||| | || || || || || ||| |||| ||| |||| ||| |||||| Sbjct 7114 TACTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCAGATTCTGCTGGTTC 7055 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || | ||||| | ||||| | |||||||| |||||||||||||| ||||| || Sbjct 7054 GACTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCGTCTCCACCTGGGAG 6995 Query 23186 TCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACACGTCGCACGTACCTGCCTTCT-T 23243 || | | || ||||| || || | || ||| | || || ||| || || | Sbjct 6994 TCCAACACGGCGAACCACAGCTGTTGGGCCTTGATCACCTTGC--GTGCCTTCCCGCTCT 6937 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCG 23303 ||||||| | ||| | | | || || | ||| | ||| |||| |||||| Sbjct 6936 TCTCGTACGACTCGTAGAGCTGCTTGAACTCCTCCCCGCACACGTCCGCCAAGCCGGGGC 6877 Query 23304 ATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGAT 23363 | | | || || | || ||| ||| || || ||||| ||| || | || Sbjct 6876 ACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCATGAACAAAT 6817 Query 23364 CCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCT 23423 | || |||| || || || ||||| || ||||| ||| || ||| |||||| |||| Sbjct 6816 CAGGCGTCCAGAGGGCATAAAACAGGTCACGGGCTCGCTCCAGCTCGTTGCCGTGATTCT 6757 Query 23424 TTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACG 23483 | || || | || || || | ||| || ||||||||||||||||||| ||| || | Sbjct 6756 TGCGCAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGG 6697 Query 23484 CGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTA 23543 |||| | ||| || ||||| || ||||| |||||||||| |||| | || | | Sbjct 6696 AGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCA 6637 Query 23544 GCATCGGCACGAGACCGTTGGACGCGCCGCCTACGC-CCGCCACACTCGAAC-CTTTTGC 23601 |||| ||||||| ||||||||| | ||| | || |||| | | | | || Sbjct 6636 GCATGGGCACGATACCGTTGGAGGTACCG--TTCGAGCCGCGGATGTAGGAGTCACGGGC 6579 Query 23602 TCGAACGTTGTGAACGTGGAAAC--CTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 || | |||||| | |||| || | || || ||| | |||| || || |||||| Sbjct 6578 GCGGATGTTGTGGA--TGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCGGCGCAT 6521 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACAC 23719 || || || |||||||||||||| |||||| |||||| || | | || | ||| || Sbjct 6520 TGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAGGAAGCAG 6461 Query 23720 GAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAG 23779 || || | |||| ||| || |||| ||| || || || |||| ||||| ||| Sbjct 6460 GAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCATGCGTGAAG 6401 Query 23780 TATCCATTCG-ACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTAT 23838 | | || | |||| || || || || ||||||||||| || | |||||| ||| || Sbjct 6400 -AGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGACGTCCTCCTTGTGGAT 6342 Query 23839 ACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTT 23898 |||||||| |||||||| ||||||| || || | ||| | || ||||| || || Sbjct 6341 GCCGATGGCCACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCCGTCCATCTT 6282 Query 23899 GAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 || ||| || || | || || || || || || ||||| |||| ||||| || || Sbjct 6281 GAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCGAAGTCCCGGTC 6222 Query 23959 GTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTA 24009 || | |||||||| || | || | | ||||| || ||||||||| Sbjct 6221 GTAGATGATGGCCGAGTTGATGCGCTCCTTGTTGGCCATGACGATGTTGTA 6171 >seq17508 Length=3941 Score = 183 bits (202), Expect = 3e-41 Identities = 630/974 (65%), Gaps = 14/974 (1%) Strand=Plus/Minus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 |||||||| | | ||| ||| || | ||| || || |||||||| || | ||| Sbjct 2988 ACAAACTTAGGCAGGACGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTA 2929 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 |||| | ||| || ||||| | || || ||||| || | ||| |||||| Sbjct 2928 TACTGGATAATCTCCGTACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTA 2869 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || || |||| |||| || || || ||||| ||||||||||||||||||| ||| || Sbjct 2868 CTCTTCAGATTACACGCGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAG 2809 Query 23186 TCGATGATCGCTCGCCACATAGTCT-GAGCGTGAACACGTCGCACGTACCTGCCTTCTTC 23244 || | ||||| ||||| |||| | || | || | | | || || ||| Sbjct 2808 TCCAAAATCGCGAACCACAG-GTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCTTT 2750 Query 23245 CTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGA 23304 || || | |||||| || || || | || | |||||| ||| ||| || | Sbjct 2749 TTCATATTGCAGGTACAGGGCCTCGAACGCCTTGCCATGGCAGTCGCCCAAGCCAGGGCA 2690 Query 23305 TTGCATCGG-ACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGAT 23363 ||| ||||| |||||| | ||||| || | || || | ||||||| | || Sbjct 2689 TTG-ATCGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAAT 2631 Query 23364 CCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCT 23423 | || ||||| || | |||||||| || || || ||| |||| || || || || | Sbjct 2630 CAGGGATCCACAGCCCATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTT 2571 Query 23424 TTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACG 23483 | |||| || | | || || | ||||||||||||||||| | ||||| ||||| | Sbjct 2570 TCCTCAAGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAGG 2511 Query 23484 CGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTA 23543 | ||||| | ||| ||||||||||| || || || ||||| || |||| | | Sbjct 2510 CCCCCGGCCGCTTCCCCCCGCCCTGATCAACATATCGCGCCGTCACGTCAAACACACGCA 2451 Query 23544 GCATCGGCACGAGACCGTTGGACGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTGC 23601 |||||||||| | ||| ||| | || | ||| || ||| | | | || | || Sbjct 2450 GCATCGGCACTAAACCATTG--CTCGTCCCCTTCGTCCCCTTGATATAGGCTCCGTGCGC 2393 Query 23602 TCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTG 23661 |||| ||||| || ||||| || || || | | || |||| |||||| || Sbjct 2392 GCGAATATTGTGCACCGACAAACCAATCCCACCCGCTGCCTTACTAATCACCGCGCACTG 2333 Query 23662 TTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGA 23721 |||| || || || || ||| | || ||| | ||| | || |||||||| Sbjct 2332 CTTCAACGTATCATAAATCCCCACAATCGAATCCGACTGCATCGTCAACAGAAAACACGA 2273 Query 23722 AGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTA 23781 |||||| || | |||| |||| ||||| || || ||||| |||| | Sbjct 2272 AGACATCTGGGGGAAACGCGTCCCGGCATGGAACAAGGTAGGCGACGCGTGGATAAACCA 2213 Query 23782 TCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACC 23841 ||| ||| | | ||||| || | || || || | ||||| || ||||| || Sbjct 2212 CTTATTACTCATCAATTCATACGTCTCCAATGCCGCCTCTAAGTCCTTCCCATGTATCCC 2153 Query 23842 GATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTT---AATTTT 23898 | || || ||||||| |||||| || || | || ||| || || | || Sbjct 2152 CAACGCCACCCGCATCACCATGTACTGCGGGCGTTCCACC---ACCTTCTTCCCCAGCTT 2096 Query 23899 GAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 || ||||| ||||| | |||||| || || |||||||| ||| || | | || ||||| Sbjct 2095 CAAGAGATAAGAACGCTCCATCGTCTTGAACCCAAAATAATCAAAGAAATAATCCCGATC 2036 Query 23959 GTGCACTATGGCCG 23972 |||| ||||||| Sbjct 2035 GTGCTGAATGGCCG 2022 >seq13286 Length=1322 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| ||||| ||||| |||||||| ||||| ||||||| || || Sbjct 888 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAAACCATCACGCTCGACGTGGAGCCC 947 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| |||| | || || || | || ||||||||| ||| | ||||||||| Sbjct 948 AGCGACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 1007 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || ||||| || || ||| |||| ||| Sbjct 1008 CAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGAC 1046 >seq5368 Length=5397 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| |||||||| ||||| ||||| ||||| ||||| || |||||| |||| || || | Sbjct 2762 CAAAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTGGAGC 2703 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| |||| | || ||||||| || ||||||||| ||| | || || | Sbjct 2702 CCAGCGACACCATCGAGAACGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCCCCTG 2643 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||||| || || || || ||||| ||| |||| || Sbjct 2642 ACCAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAGGA 2603 >seq22358 Length=3586 Score = 111 bits (122), Expect = 1e-19 Identities = 164/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| ||||| ||||| ||||| || |||||| |||| || || || Sbjct 3096 AAGATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCC 3155 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| |||| | || || || | || ||||||||| ||| | ||||||||| Sbjct 3156 AGCGACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 3215 Query 31310 CAGCAGCGTCTAATATTCGC-TGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||| || || ||||| ||||| ||| |||| ||| || | || || Sbjct 3216 CAGCAGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTA 3275 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| || || || || || |||| || | ||| | ||||| Sbjct 3276 CAACATCCAAAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGCGAGGCGG 3326 >seq10165 Length=1505 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 31183 TGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGT 31242 || |||| |||||| || ||||| ||||| ||||| ||||| || ||||| | ||||| Sbjct 135 TGTATCAGGCATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTGGACGT 76 Query 31243 TGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCC 31302 || ||| ||||| |||| | || || |||| || ||||||||||||| | || Sbjct 75 GGAGCCGAGCGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATACC 16 Query 31303 GCCCGACCAGCA 31314 || |||||||| Sbjct 15 CCCTGACCAGCA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445633834644720