Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq19097 114 3e-20 >seq19097 Length=7688 Score = 114 bits (126), Expect = 3e-20 Identities = 289/431 (67%), Gaps = 10/431 (2%) Strand=Plus/Plus Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT--- 35449 ||||| || ||||| || || || || || || ||||| ||||| || || |||||| Sbjct 2701 GAGGGGGACTTGGGGCCAGTGTATGGGTTTCAGTGGCGGCATTTCGGGGCGGAATATAAG 2760 Query 35450 GATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAG 35509 |||| || | | |||||||| || ||||| || ||||| |||| | || Sbjct 2761 GATA--TGCACG-CTGATTATACGGGGAAGGGCATCGATCAGCTGGCAGCGGCGATTGAG 2817 Query 35510 ACCCTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGA 35568 || | | |||| || || || ||| || |||| ||| | |||| ||||| || || Sbjct 2818 ACGATTA-AGAAGAACCCGGAGGATCGACGGATTATTGTCTCGGCGTGGAACCCGGCCGA 2876 Query 35569 TCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGG 35628 | | ||||| | || || || |||||| | ||| || || ||||| ||||| Sbjct 2877 TTTGGGGAAGATGGCCTTGCCGCCTTGTCACATGTTTTGTCAGTTCTACGTGGCCAATGG 2936 Query 35629 AGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAA 35688 || ||||| |||||| |||| || || || | ||| | || ||||||||||| || || Sbjct 2937 GGAGTTGTCCTGCCAGATGTACCAACGCAGTGCGGATATGGGCTTGGGCGTGCCGTTTAA 2996 Query 35689 TATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGG 35747 |||||| || ||| | | |||| | || |||| ||| |||||| | || ||| Sbjct 2997 TATTGCGTCTTACGCGTTGTTGACGCGGTTGGTGGCGCAGGTGTGTGGGT-TGAAGGCGG 3055 Query 35748 GAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAA 35807 | |||||| | | || |||| || || ||| | || | ||| | |||| || | Sbjct 3056 GGGAGTTTGTGCATACGATTGGGGATGCCCACGTGTACTCCAACCATGTCGAGGCCTTGA 3115 Query 35808 AGAAGCAGTTG 35818 || |||| ||| Sbjct 3116 AGGAGCAATTG 3126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989282352840405