Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq17508 113 6e-20 >seq17508 Length=3941 Score = 113 bits (124), Expect = 6e-20 Identities = 546/861 (63%), Gaps = 8/861 (1%) Strand=Plus/Minus Query 62946 ACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 63005 || || |||| ||||||||| || ||||| | | || ||| || || ||||| || Sbjct 2970 ACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTATACTGGATAATCTCCGTA 2911 Query 63006 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63065 || | || || || || |||| ||| || || |||||||| |||||||| Sbjct 2910 CACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTACTCTTCAGATTACACGCG 2851 Query 63066 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63125 || |||||||| || | || || || || || ||||| || || | |||||| ||| Sbjct 2850 TCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAGTCCAAAATCGCGAACCAC 2791 Query 63126 ACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAAT 63185 | | || | || | | ||| ||| | || |||| ||| | |||| Sbjct 2790 AGGTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCTTTTTCATATTGCAGGTACAGG 2731 Query 63186 CGTTCGAACTCGTCTCCCCAAACATT-GTCCAATCTAGGACATTCATCCGGACACATCAA 63244 |||||| | | | || || | | |||| | ||| |||| ||| ||||||||||| Sbjct 2730 GCCTCGAACGCCT-TGCCATGGCAGTCGCCCAAGCCAGGGCATTGATCGGGACACATCAA 2672 Query 63245 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304 ||||||| | || || |||| ||| | |||||||| | |||||| ||||| || | || Sbjct 2671 CGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAATCAGGGATCCACAG-CCCAT 2613 Query 63305 A-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63363 | || ||||| | | | || || || || ||| || | | || || | | Sbjct 2612 AGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTTTCCTCAAGTCAAGCACCT 2553 Query 63364 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63423 | | |||||| | ||||||||| || | ||| || || | | || ||||| || | Sbjct 2552 CAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAGGCCCCCGGCCGCTTCCCCC 2493 Query 63424 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63483 | |||||||| | |||| || || | | | || | || ||| || | | ||| | Sbjct 2492 CGCCCTGATCAACATATCGCGCCGTCACGTCAAACACACGCAGCATCGGCACTAAACCAT 2433 Query 63484 TTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATA 63543 | | || || || || ||||||| |||| || |||||||| | || | Sbjct 2432 TGCTCGTCCCCTTCGTCCCCTTGATATAGGCTCCGTGCGCGCGAATATTGTGCACCGACA 2373 Query 63544 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGC 63603 ||| || || || || ||| || | ||||| | || ||||| ||||| || | Sbjct 2372 AACCAATCCCACCCGCTGCCTTACTAATCACCGCGCACTGCTTCAACGTATCATAAATCC 2313 Query 63604 CTTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 | | || ||| ||| ||| | | |||||||| |||||| ||| | | Sbjct 2312 CCACAATCGAATC--CGACTGCATCGTCAACAGAAAACACGAAGACATCTGGGGGAAACG 2255 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 || || |||| || |||||||| || ||||| ||||||| || | | | | | Sbjct 2254 CGTCCCGGCATGGAACAAGGTAGGCGACGCGTGGATAAACCACTTATTACTCATCAATTC 2195 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 |||||||| | || | |||| ||| ||| || || | || || ||||| | Sbjct 2194 ATACGTCTCCAATGCCGCCTCTAAGTCCTTCCCATGTATCCCCAACGCCACCCGCATCAC 2135 Query 63782 CATGTGCTGAGGTCTTTCAAC 63802 ||||| ||| || | ||| || Sbjct 2134 CATGTACTGCGGGCGTTCCAC 2114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629630300118480