Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq19097 134 1e-26 >seq19097 Length=7688 Score = 134 bits (148), Expect = 1e-26 Identities = 274/407 (67%), Gaps = 0/407 (0%) Strand=Plus/Minus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 || || |||||| ||| |||||||| || || | || |||||||| || |||| || Sbjct 3107 TCGACATGGTTGGAGTACACGTGGGCATCCCCAATCGTATGCACAAACTCCCCCGCCTTC 3048 Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 | || || || || | || ||||| | ||||| || || |||||||| Sbjct 3047 AACCCACACACCTGCGCCACCAACCGCGTCAACAACGCGTAAGACGCAATATTAAACGGC 2988 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || | |||||| || || | ||||||| ||||||||||| |||||| ||| Sbjct 2987 ACGCCCAAGCCCATATCCGCACTGCGTTGGTACATCTGGCAGGACAACTCCCCATTGGCC 2928 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 ||||| |||||||| || | ||||||||| || | |||||| | | | || || ||| Sbjct 2927 ACGTAGAACTGACAAAACATGTGACAAGGCGGCAAGGCCATCTTCCCCAAATCGGCCGGG 2868 Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACG 21230 |||||||| | | || || || ||||| | || | | ||||| || | | | Sbjct 2867 TTCCACGCCGAGACAATAATCCGTCGATCCTCCGGGTTCTTCTTAATCGTCTCAATCGCC 2808 Query 21231 TAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCC 21290 |||||| || | |||| ||| || | |||| || | || |||||| Sbjct 2807 GCTGCCAGCTGATCGATGCCCTTCCCCGTATAATCAGCGTGCATATCCTTATATTCCGCC 2748 Query 21291 CCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTC 21337 || ||||| | |||||| ||||| ||||| ||||||| || ||||| Sbjct 2747 CCGAAATGCCGCCACTGAAACCCATACACTGGCCCCAAGTCCCCCTC 2701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427651965145680