Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq17508 167 3e-36 >seq17508 Length=3941 Score = 167 bits (184), Expect = 3e-36 Identities = 591/918 (64%), Gaps = 4/918 (0%) Strand=Plus/Minus Query 79616 CGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAG 79675 |||| || |||| |||||| || || ||||| | | || ||| || || || || | Sbjct 2972 CGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTATACTGGATAATCTCCG 2913 Query 79676 TGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 79735 | || | ||| || ||| || |||| ||| || || |||||||| ||||||| Sbjct 2912 TACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTACTCTTCAGATTACACG 2853 Query 79736 CATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 79795 | || |||||||| || |||| || || || || ||||| || || | |||||| || Sbjct 2852 CGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAGTCCAAAATCGCGAACC 2793 Query 79796 AGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATA 79855 | | | || | || | | |||| ||| || |||| ||||| || | Sbjct 2792 ACAGGTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCTTTTTCATATTGCAGGTACA 2733 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACA-TCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 |||||| | | | || || ||| | || ||||| |||| || ||||||||| Sbjct 2732 GGGCCTCGAACGCCT-TGCCATGGCAGTCGCCCAAGCCAGGGCATTGATCGGGACACATC 2674 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 ||||||||| | ||||| |||| || | |||||||| | |||||| ||||| || | Sbjct 2673 AACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAATCAGGGATCCACAG-CCC 2615 Query 79975 ATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 ||| || ||||| | | | ||| || || || ||| || | | || || | Sbjct 2614 ATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTTTCCTCAAGTCAAGCAC 2555 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | | |||||| | ||||||||| || | ||| || || | | ||||| || || Sbjct 2554 CTCAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAGGCCCCCGGCCGCTTCCC 2495 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || |||||||| | |||| || || | | | || | || ||| || | | ||| Sbjct 2494 CCCGCCCTGATCAACATATCGCGCCGTCACGTCAAACACACGCAGCATCGGCACTAAACC 2435 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||| || || || ||||| ||||||| ||| || |||||||| | || Sbjct 2434 ATTGCTCGTCCCCTTCGTCCCCTTGATATAGGCTCCGTGCGCGCGAATATTGTGCACCGA 2375 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | ||||| | || ||||||||||| || Sbjct 2374 CAAACCAATCCCACCCGCTGCCTTACTAATCACCGCGCACTGCTTCAACGTATCATAAAT 2315 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 ||| | || ||| ||| | | |||||||| |||||| ||| | || Sbjct 2314 CCCCACAATCGAATCCGACTGCATCGTCAACAGAAAACACGAAGACATCTGGGGGAAACG 2255 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || |||| || |||||||| || ||||| ||||||| || | | || | | Sbjct 2254 CGTCCCGGCATGGAACAAGGTAGGCGACGCGTGGATAAACCACTTATTACTCATCAATTC 2195 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 |||||||| | || | |||| ||| ||| || || | ||| || ||||| | Sbjct 2194 ATACGTCTCCAATGCCGCCTCTAAGTCCTTCCCATGTATCCCCAACGCCACCCGCATCAC 2135 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||| ||| || | ||| || | ||| || | ||||| | ||||| |||| Sbjct 2134 CATGTACTGCGGGCGTTCCACCACCTTCTTCCCCAGCTTCAAGAGATAAGAACGCTCCAT 2075 Query 80514 AGTTTTAAAACCAAAATA 80531 || || || |||||||| Sbjct 2074 CGTCTTGAACCCAAAATA 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718055195837240