Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq17508 163 4e-35 >seq17508 Length=3941 Score = 163 bits (180), Expect = 4e-35 Identities = 589/916 (64%), Gaps = 4/916 (0%) Strand=Plus/Minus Query 71701 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTG 71760 || || |||| |||||| || || ||||| | | | ||| || ||||| || || Sbjct 2970 ACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTATACTGGATAATCTCCGTA 2911 Query 71761 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 71820 || | || || || || |||| ||| || || |||||||| |||||||| Sbjct 2910 CACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTACTCTTCAGATTACACGCG 2851 Query 71821 TCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 71880 || |||||||| ||| |||| || || || || ||||| || || | |||||| ||| Sbjct 2850 TCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAGTCCAAAATCGCGAACCAC 2791 Query 71881 ACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAAT 71940 | | || | || | | |||||| ||| || |||| ||||| || | Sbjct 2790 AGGTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCTTTTTCATATTGCAGGTACAGG 2731 Query 71941 CGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAA 71999 |||||| | | | || ||| | | | || ||||| |||| || ||||||||||| Sbjct 2730 GCCTCGAACGCCT-TGCCATGGCAGTCGCCCAAGCCAGGGCATTGATCGGGACACATCAA 2672 Query 72000 TGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 72059 |||||| | ||||| || | || | |||||||| | |||||| ||||| || | || Sbjct 2671 CGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAATCAGGGATCCACAGCCC-AT 2613 Query 72060 A-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 | || ||||| | | | ||| || || || ||| || | | || || | | Sbjct 2612 AGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTTTCCTCAAGTCAAGCACCT 2553 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | |||||| | ||||||||| || | ||| || || | | |||||||| || | Sbjct 2552 CAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAGGCCCCCGGCCGCTTCCCCC 2493 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 | |||||||| | |||| || || | | | || | || ||| || | | ||||| Sbjct 2492 CGCCCTGATCAACATATCGCGCCGTCACGTCAAACACACGCAGCATCGGCACTAAACCAT 2433 Query 72239 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATA 72298 || | || || ||||| ||||||| ||| || ||||||||| | || | Sbjct 2432 TGCTCGTCCCCTTCGTCCCCTTGATATAGGCTCCGTGCGCGCGAATATTGTGCACCGACA 2373 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 ||| || || || || ||| || | ||||| | || ||||||||||| || | Sbjct 2372 AACCAATCCCACCCGCTGCCTTACTAATCACCGCGCACTGCTTCAACGTATCATAAATCC 2313 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 || | || ||| | ||| | | |||||||| |||||| ||| | || | Sbjct 2312 CCACAATCGAATCCGACTGCATCGTCAACAGAAAACACGAAGACATCTGGGGGAAACGCG 2253 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 | || |||| || |||||||| || ||||| ||||||| || | | || | | | Sbjct 2252 TCCCGGCATGGAACAAGGTAGGCGACGCGTGGATAAACCACTTATTACTCATCAATTCAT 2193 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 ||||||| | || | |||| ||| |||||| || | ||| || ||||| | || Sbjct 2192 ACGTCTCCAATGCCGCCTCTAAGTCCTTCCCATGTATCCCCAACGCCACCCGCATCACCA 2133 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | | ||| || | ||| || | ||| || | ||||| | || || |||| | Sbjct 2132 TGTACTGCGGGCGTTCCACCACCTTCTTCCCCAGCTTCAAGAGATAAGAACGCTCCATCG 2073 Query 72599 TTTTAAAACCAAAATA 72614 | || || |||||||| Sbjct 2072 TCTTGAACCCAAAATA 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670939611591160