Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7782 107 3e-18 >seq7782 Length=16676 Score = 107 bits (118), Expect = 3e-18 Identities = 305/465 (66%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| | ||| | || || |||||||| ||| | || || || | || ||||||| || Sbjct 6702 GCCATTTACCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTTGACCTGCGCAAGAAT 6761 Query 96966 TCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTG 97025 ||| || || |||||| | ||| |||||||||| |||||| ||| |||||| Sbjct 6762 CACGGCAACGAGCTGGAGCGAGCCCGTGACCTGTTTTATGCCCTCTGGACGCCTGATTTG 6821 Query 97026 TTCATGAAGCGCGT---CAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCA 97082 |||||| ||||||| |||||||||| ||||| ||| | |||||| | || Sbjct 6822 TTCATGCAGCGCGTGGAGAACGACGGTG---ACTGGTCCCTGTTTTGCCCCAATGAGTGC 6878 Query 97083 CCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCA- 97141 ||||| || | || || || || ||||| || ||| | | |||||| | Sbjct 6879 CCCGGCTTGGCGGACGTGTGCGGGGAGGAGTTCAAGCAGCTCTACGAGTCGTACGAGAAG 6938 Query 97142 AGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGC 97201 || ||| | ||| || || || | || | | | |||||| ||| | || | Sbjct 6939 AGCGGGAAGGCACGCAAGGTGA-TCAAGGCCCAACAGCTGTGGTTCGCCGTGTTGGACTC 6997 Query 97202 TCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAA 97261 ||||| ||||| || || || ||||| || | ||||| | || | ||| || Sbjct 6998 CCAGGTGGAGACGGGCACGCCCTACATGCTGTTTAAGGACGCTTGCAACCTCAAGTCGAA 7057 Query 97262 CCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGC 97321 ||| | | |||| |||||| |||||| || |||||||| || | |||||| | Sbjct 7058 CCAGCAGAATCTGGGGGTGATCAAGTCCTCCAACCTTTGCACGGAGATCATCGAGTACAC 7117 Query 97322 CTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCT 97366 | | || |||||| ||| || ||| || || |||||||| || Sbjct 7118 CGCCCCCGACGAGGTGGCCGTCTGCAACCTTGCCTCGGTCAACCT 7162 Score = 87.8 bits (96), Expect = 3e-12 Identities = 183/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 97950 CTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATT 98009 |||||||||| || || | | ||||||| |||| ||| ||| | |||||| | Sbjct 7779 CTGTGGAACGCCGAGGTGCGCAACCAGATCATGGGCAACCGTGGCTCCGTGCAAAACGTG 7838 Query 98010 ACCATCATCCCGGAAGAGTTGC-GCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAA 98068 ||| |||||| ||| | | || |||||||||| || |||||||| | | || Sbjct 7839 GCCAGCATCCCCCGCGAGCTCAAGGAGC-TCTACAAGACCGTGTGGGAGATCCGGCAGAA 7897 Query 98069 GACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAA 98128 | | ||||| ||||| |||||| | || | |||||| |||| || || |||| Sbjct 7898 GTGCGTCATCGACATGGCGGCCGACCGCGGCGCCTACATCTGCCAGTCCCAGTCCCTCAA 7957 Query 98129 TCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAA 98188 | || | ||| | ||||| | | | || || || ||||| ||| | ||||| Sbjct 7958 CATCCACCTGGCCAACCCCACGCCCGCCCAGCTCACCTCCATGCACTTCTACTCCTGGAA 8017 Query 98189 CAAGGGCCTCAAGACGGGCATGTACTATCT 98218 ||||| |||||||| ||||||||||| || Sbjct 8018 GAAGGGGCTCAAGACCGGCATGTACTACCT 8047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740838818257160