Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_004775.1 Length=39671 Score E Sequences producing significant alignments: (Bits) Value seq2514 116 9e-22 >seq2514 Length=426 Score = 116 bits (128), Expect = 9e-22 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 1216 GAAGTAGCAGAAGGCGCGCTGACGGACGAAGACACCGAAATCATCTGGGTGGCGTTCGGT 1275 || || ||||||||||| ||||| ||||||||||| | || || ||| | ||||| Sbjct 1 GAGGTGGCAGAAGGCGCCCTGACTGACGAAGACACAGTGATTATATGGATATGCTTCGGG 60 Query 1276 AACCCGACGCGTAACACCGGGCGTTTCCGTGAATGTTTCCGCAAGTACAAACACCGCTGG 1335 ||||| |||| ||| | || || ||| | || || ||| | |||| ||| | ||| Sbjct 61 AACCCCACGCAGAACTCAGGTCGCTTCAGAGAGTGCTTCAGGAAGTTTCGACATAGGTGG 120 Query 1336 AAGTGCGCGCAGATTGACAGCCGCACCGTTGAAGGCACTAACAAGCAGCAGTTGCAGAAG 1395 | | ||| || ||||| || || || |||||||| ||||| | ||| | | | Sbjct 121 ATACACAAGCATATCGACAGTCGTACGGTCGAAGGCACCAACAAAGAACAGCTCGATAGA 180 Query 1396 TGGGTAGACGACTACGGCGAGGAAAGCGACTTTGTTAAAGTTCGTGTGCGCGGAATATTC 1455 ||| || ||||| ||||| || ||||| | || ||||| ||||| ||||| |||||| Sbjct 181 ATGGTTGAAGACTATGGCGAAGACAGCGATATCGTCAAAGTACGTGTACGCGGCATATTC 240 Query 1456 CC 1457 || Sbjct 241 CC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126789769469286