Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq21338 95.1 1e-14 seq13286 95.1 1e-14 seq22358 89.7 4e-13 seq5368 87.8 1e-12 >seq21338 Length=400 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || || ||||| ||||| | ||| | |||||||| ||||| |||| Sbjct 191 GTGGACTCCTTCTGGATTTTGTAGTCCGCGACTGTGCGCGTGTCCTCCACCTGTTCACCC 250 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || ||||| || | ||| ||||| || | |||||| ||| | |||| | ||| || Sbjct 251 GCGTAAATGAGCCGCTGTTGATCGGGCGGGATGCCCTCCTTGACTTCAATCTCCTGCTTC 310 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 | | || || ||| ||| || | | ||| ||||||||||| || || | ||| Sbjct 311 AAAGTCCAGATGGTGTCGGAAGGATCGATATTGACTGTAATGGTTTTGCCAGTCAGCGTT 370 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 371 TTGACGAAGATCTGCAT 387 >seq13286 Length=1322 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||||| || |||||||| || || ||||| |||| | || ||||| Sbjct 1102 AACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCCGTCC 1043 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||||||| || ||||| | || || | |||||| || || | |||||| ||||| Sbjct 1042 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 983 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || || || || | ||| || |||| |||||| |||| || |||||| Sbjct 982 TGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGATGGTT 923 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || || | || ||||| || |||||||| || Sbjct 922 TTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 >seq22358 Length=3586 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || ||||||| | | |||| ||||| || ||||||||||| || ||||| |||| Sbjct 3326 CCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 3267 Query 18875 ATTGTTTTGGCGTCCTCCAGCTG-TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | || | ||||||||||||| || ||||| | || || | |||||| || || Sbjct 3266 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 3207 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | |||||| ||||| || || || || || | ||| || |||| ||||| Sbjct 3206 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGAC 3147 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 |||| ||| ||||| || || || | || ||||| || |||||||| || Sbjct 3146 ATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 3096 >seq5368 Length=5397 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||||||||| || || ||| | || |||| |||||| || ||| | |||||| ||| Sbjct 2603 TCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 2662 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || || |||||||| || | ||| || |||| |||||| |||| ||| ||| Sbjct 2663 TCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATG 2722 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || || || | || ||||| || |||||||| || Sbjct 2723 GTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 2760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414452593450654