Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13286 87.8 2e-12 >seq13286 Length=1322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 || || || || | || |||||||||||||||| || || ||||| || | ||| || Sbjct 1123 TAGACACCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAG 1064 Query 94835 TCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 || | ||| ||||||||||| || || | ||||| | | ||||| || Sbjct 1063 TCCGAAAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCG 1004 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 || || || || || ||||| | || ||| ||| ||| ||| ||||| | | Sbjct 1003 GGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGC 944 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | |||||||||||| || || || || || || ||||| ||||| Sbjct 943 TCCACGTCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448157883800760